Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PELI1 (pellino E3 ubiquitin protein ligase 1)

Identity

Alias (NCBI)-
HGNC (Hugo) PELI1
HGNC Previous namepellino (Drosophila) homolog 1
 pellino homolog 1 (Drosophila)
LocusID (NCBI) 57162
Atlas_Id 45969
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 64092652 and ends at 64144420 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PELI1 (2p14) / ACTG2 (2p13.1)PELI1 (2p14) / APLF (2p13.3)PELI1 (2p14) / KRT8 (12q13.13)
VPS54 (2p14) / PELI1 (2p14)PELI1 2p14 / ACTG2 2p13.1PELI1 2p14 / APLF 2p13.3
PELI1 2p14 / KRT8 12q13.13VPS54 2p14 / PELI1 2p14

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)PELI1   8827
Cards
Entrez_Gene (NCBI)PELI1    pellino E3 ubiquitin protein ligase 1
Aliases
GeneCards (Weizmann)PELI1
Ensembl hg19 (Hinxton)ENSG00000197329 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197329 [Gene_View]  ENSG00000197329 [Sequence]  chr2:64092652-64144420 [Contig_View]  PELI1 [Vega]
ICGC DataPortalENSG00000197329
TCGA cBioPortalPELI1
AceView (NCBI)PELI1
Genatlas (Paris)PELI1
SOURCE (Princeton)PELI1
Genetics Home Reference (NIH)PELI1
Genomic and cartography
GoldenPath hg38 (UCSC)PELI1  -     chr2:64092652-64144420 -  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PELI1  -     2p14   [Description]    (hg19-Feb_2009)
GoldenPathPELI1 - 2p14 [CytoView hg19]  PELI1 - 2p14 [CytoView hg38]
ImmunoBaseENSG00000197329
Genome Data Viewer NCBIPELI1 [Mapview hg19]  
OMIM614797   
Gene and transcription
Genbank (Entrez)AF086327 AF300987 AF302505 AJ278859 AK022261
RefSeq transcript (Entrez)NM_020651
Consensus coding sequences : CCDS (NCBI)PELI1
Gene ExpressionPELI1 [ NCBI-GEO ]   PELI1 [ EBI - ARRAY_EXPRESS ]   PELI1 [ SEEK ]   PELI1 [ MEM ]
Gene Expression Viewer (FireBrowse)PELI1 [ Firebrowse - Broad ]
GenevisibleExpression of PELI1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57162
GTEX Portal (Tissue expression)PELI1
Human Protein AtlasENSG00000197329-PELI1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FA3
PhosPhoSitePlusQ96FA3
Domains : Interpro (EBI)Pellino_fam   
Domain families : Pfam (Sanger)Pellino (PF04710)   
Domain families : Pfam (NCBI)pfam04710   
Conserved Domain (NCBI)PELI1
SuperfamilyQ96FA3
AlphaFold pdb e-kbQ96FA3   
Human Protein Atlas [tissue]ENSG00000197329-PELI1 [tissue]
HPRD17834
Protein Interaction databases
DIP (DOE-UCLA)Q96FA3
IntAct (EBI)Q96FA3
BioGRIDPELI1
STRING (EMBL)PELI1
ZODIACPELI1
Ontologies - Pathways
QuickGOQ96FA3
Ontology : AmiGOprotein polyubiquitination  positive regulation of cytokine production  protein binding  nucleus  cytosol  Toll signaling pathway  regulation of Toll signaling pathway  positive regulation of B cell proliferation  positive regulation of protein ubiquitination  negative regulation of NF-kappaB transcription factor activity  response to lipopolysaccharide  positive regulation of toll-like receptor 3 signaling pathway  positive regulation of toll-like receptor 4 signaling pathway  negative regulation of T cell proliferation  positive regulation of I-kappaB kinase/NF-kappaB signaling  proteasome-mediated ubiquitin-dependent protein catabolic process  response to dsRNA  regulation of necroptotic process  negative regulation of necroptotic process  ubiquitin protein ligase activity  ubiquitin protein ligase activity  ubiquitin protein ligase activity  interleukin-1-mediated signaling pathway  protein K63-linked ubiquitination  protein K48-linked ubiquitination  protein K48-linked ubiquitination  
Ontology : EGO-EBIprotein polyubiquitination  positive regulation of cytokine production  protein binding  nucleus  cytosol  Toll signaling pathway  regulation of Toll signaling pathway  positive regulation of B cell proliferation  positive regulation of protein ubiquitination  negative regulation of NF-kappaB transcription factor activity  response to lipopolysaccharide  positive regulation of toll-like receptor 3 signaling pathway  positive regulation of toll-like receptor 4 signaling pathway  negative regulation of T cell proliferation  positive regulation of I-kappaB kinase/NF-kappaB signaling  proteasome-mediated ubiquitin-dependent protein catabolic process  response to dsRNA  regulation of necroptotic process  negative regulation of necroptotic process  ubiquitin protein ligase activity  ubiquitin protein ligase activity  ubiquitin protein ligase activity  interleukin-1-mediated signaling pathway  protein K63-linked ubiquitination  protein K48-linked ubiquitination  protein K48-linked ubiquitination  
NDEx NetworkPELI1
Atlas of Cancer Signalling NetworkPELI1
Wikipedia pathwaysPELI1
Orthology - Evolution
OrthoDB57162
GeneTree (enSembl)ENSG00000197329
Phylogenetic Trees/Animal Genes : TreeFamPELI1
Homologs : HomoloGenePELI1
Homology/Alignments : Family Browser (UCSC)PELI1
Gene fusions - Rearrangements
Fusion : MitelmanPELI1/ACTG2 [2p14/2p13.1]  
Fusion : MitelmanPELI1/APLF [2p14/2p13.3]  
Fusion : MitelmanPELI1/KRT8 [2p14/12q13.13]  
Fusion : QuiverPELI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPELI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PELI1
dbVarPELI1
ClinVarPELI1
MonarchPELI1
1000_GenomesPELI1 
Exome Variant ServerPELI1
GNOMAD BrowserENSG00000197329
Varsome BrowserPELI1
ACMGPELI1 variants
VarityQ96FA3
Genomic Variants (DGV)PELI1 [DGVbeta]
DECIPHERPELI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPELI1 
Mutations
ICGC Data PortalPELI1 
TCGA Data PortalPELI1 
Broad Tumor PortalPELI1
OASIS PortalPELI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPELI1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPELI1
Mutations and Diseases : HGMDPELI1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPELI1
DgiDB (Drug Gene Interaction Database)PELI1
DoCM (Curated mutations)PELI1
CIViC (Clinical Interpretations of Variants in Cancer)PELI1
Cancer3DPELI1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614797   
Orphanet
DisGeNETPELI1
MedgenPELI1
Genetic Testing Registry PELI1
NextProtQ96FA3 [Medical]
GENETestsPELI1
Target ValidationPELI1
Huge Navigator PELI1 [HugePedia]
ClinGenPELI1
Clinical trials, drugs, therapy
MyCancerGenomePELI1
Protein Interactions : CTDPELI1
Pharm GKB GenePA33172
PharosQ96FA3
Clinical trialPELI1
Miscellaneous
canSAR (ICR)PELI1
HarmonizomePELI1
DataMed IndexPELI1
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPELI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:24:54 CEST 2021
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