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PELO (pelota homolog (Drosophila))

Identity

Alias_namespelota (Drosophila) homolog
Other aliasCGI-17
PRO1770
HGNC (Hugo) PELO
LocusID (NCBI) 53918
Atlas_Id 56038
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 52787940 and ends at 52802617 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PELO   8829
Cards
Entrez_Gene (NCBI)PELO  53918  pelota homolog (Drosophila)
AliasesCGI-17; PRO1770
GeneCards (Weizmann)PELO
Ensembl hg19 (Hinxton)ENSG00000152684 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152684 [Gene_View]  chr5:52787940-52802617 [Contig_View]  PELO [Vega]
ICGC DataPortalENSG00000152684
TCGA cBioPortalPELO
AceView (NCBI)PELO
Genatlas (Paris)PELO
WikiGenes53918
SOURCE (Princeton)PELO
Genetics Home Reference (NIH)PELO
Genomic and cartography
GoldenPath hg38 (UCSC)PELO  -     chr5:52787940-52802617 +  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PELO  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblPELO - 5q11.2 [CytoView hg19]  PELO - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIPELO [Mapview hg19]  PELO [Mapview hg38]
OMIM605757   
Gene and transcription
Genbank (Entrez)AF118075 AF132951 AF139828 AK025729 AK056144
RefSeq transcript (Entrez)NM_015946
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PELO
Cluster EST : UnigeneHs.644352 [ NCBI ]
CGAP (NCI)Hs.644352
Alternative Splicing GalleryENSG00000152684
Gene ExpressionPELO [ NCBI-GEO ]   PELO [ EBI - ARRAY_EXPRESS ]   PELO [ SEEK ]   PELO [ MEM ]
Gene Expression Viewer (FireBrowse)PELO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53918
GTEX Portal (Tissue expression)PELO
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRX2
Splice isoforms : SwissVarQ9BRX2
PhosPhoSitePlusQ9BRX2
Domains : Interpro (EBI)eRF1_1_Pelota    eRF1_2    eRF1_3    L30e-like    Transl-rel_pelota   
Domain families : Pfam (Sanger)eRF1_1 (PF03463)    eRF1_2 (PF03464)    eRF1_3 (PF03465)   
Domain families : Pfam (NCBI)pfam03463    pfam03464    pfam03465   
Domain families : Smart (EMBL)eRF1_1 (SM01194)  
Conserved Domain (NCBI)PELO
DMDM Disease mutations53918
Blocks (Seattle)PELO
PDB (SRS)1X52    5EO3    5LZW    5LZX    5LZY    5LZZ   
PDB (PDBSum)1X52    5EO3    5LZW    5LZX    5LZY    5LZZ   
PDB (IMB)1X52    5EO3    5LZW    5LZX    5LZY    5LZZ   
PDB (RSDB)1X52    5EO3    5LZW    5LZX    5LZY    5LZZ   
Structural Biology KnowledgeBase1X52    5EO3    5LZW    5LZX    5LZY    5LZZ   
SCOP (Structural Classification of Proteins)1X52    5EO3    5LZW    5LZX    5LZY    5LZZ   
CATH (Classification of proteins structures)1X52    5EO3    5LZW    5LZX    5LZY    5LZZ   
SuperfamilyQ9BRX2
Human Protein AtlasENSG00000152684
Peptide AtlasQ9BRX2
HPRD09309
IPIIPI00106698   IPI00022925   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRX2
IntAct (EBI)Q9BRX2
FunCoupENSG00000152684
BioGRIDPELO
STRING (EMBL)PELO
ZODIACPELO
Ontologies - Pathways
QuickGOQ9BRX2
Ontology : AmiGOendonuclease activity  protein binding  nucleus  cytoplasm  translation  cell cycle  endoderm development  cell proliferation  stem cell population maintenance  positive regulation of BMP signaling pathway  ribosome disassembly  ribosome binding  metal ion binding  chromosome organization  cell division  mesenchymal to epithelial transition  nuclear-transcribed mRNA catabolic process, non-stop decay  nonfunctional rRNA decay  nuclear-transcribed mRNA catabolic process, no-go decay  RNA surveillance  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIendonuclease activity  protein binding  nucleus  cytoplasm  translation  cell cycle  endoderm development  cell proliferation  stem cell population maintenance  positive regulation of BMP signaling pathway  ribosome disassembly  ribosome binding  metal ion binding  chromosome organization  cell division  mesenchymal to epithelial transition  nuclear-transcribed mRNA catabolic process, non-stop decay  nonfunctional rRNA decay  nuclear-transcribed mRNA catabolic process, no-go decay  RNA surveillance  nucleic acid phosphodiester bond hydrolysis  
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkPELO
Atlas of Cancer Signalling NetworkPELO
Wikipedia pathwaysPELO
Orthology - Evolution
OrthoDB53918
GeneTree (enSembl)ENSG00000152684
Phylogenetic Trees/Animal Genes : TreeFamPELO
HOVERGENQ9BRX2
HOGENOMQ9BRX2
Homologs : HomoloGenePELO
Homology/Alignments : Family Browser (UCSC)PELO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPELO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PELO
dbVarPELO
ClinVarPELO
1000_GenomesPELO 
Exome Variant ServerPELO
ExAC (Exome Aggregation Consortium)PELO (select the gene name)
Genetic variants : HAPMAP53918
Genomic Variants (DGV)PELO [DGVbeta]
DECIPHERPELO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPELO 
Mutations
ICGC Data PortalPELO 
TCGA Data PortalPELO 
Broad Tumor PortalPELO
OASIS PortalPELO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPELO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPELO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PELO
DgiDB (Drug Gene Interaction Database)PELO
DoCM (Curated mutations)PELO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PELO (select a term)
intoGenPELO
Cancer3DPELO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605757   
Orphanet
MedgenPELO
Genetic Testing Registry PELO
NextProtQ9BRX2 [Medical]
TSGene53918
GENETestsPELO
Target ValidationPELO
Huge Navigator PELO [HugePedia]
snp3D : Map Gene to Disease53918
BioCentury BCIQPELO
ClinGenPELO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53918
Chemical/Pharm GKB GenePA33174
Clinical trialPELO
Miscellaneous
canSAR (ICR)PELO (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePELO
EVEXPELO
GoPubMedPELO
iHOPPELO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:49:05 CEST 2017

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