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PEPD (peptidase D)

Identity

Other namesPROLIDASE
HGNC (Hugo) PEPD
LocusID (NCBI) 5184
Atlas_Id 47595
Location 19q13.11
Location_base_pair Starts at 33877855 and ends at 34012799 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PEPD   8840
Cards
Entrez_Gene (NCBI)PEPD  5184  peptidase D
GeneCards (Weizmann)PEPD
Ensembl hg19 (Hinxton)ENSG00000124299 [Gene_View]  chr19:33877855-34012799 [Contig_View]  PEPD [Vega]
Ensembl hg38 (Hinxton)ENSG00000124299 [Gene_View]  chr19:33877855-34012799 [Contig_View]  PEPD [Vega]
ICGC DataPortalENSG00000124299
TCGA cBioPortalPEPD
AceView (NCBI)PEPD
Genatlas (Paris)PEPD
WikiGenes5184
SOURCE (Princeton)PEPD
Genomic and cartography
GoldenPath hg19 (UCSC)PEPD  -     chr19:33877855-34012799 -  19q13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PEPD  -     19q13.11   [Description]    (hg38-Dec_2013)
EnsemblPEPD - 19q13.11 [CytoView hg19]  PEPD - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIPEPD [Mapview hg19]  PEPD [Mapview hg38]
OMIM170100   613230   
Gene and transcription
Genbank (Entrez)AK057538 AK225037 AK290756 AK290781 AK291561
RefSeq transcript (Entrez)NM_000285 NM_001166056 NM_001166057
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_013358 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)PEPD
Cluster EST : UnigeneHs.36473 [ NCBI ]
CGAP (NCI)Hs.36473
Alternative Splicing : Fast-db (Paris)GSHG0015721
Alternative Splicing GalleryENSG00000124299
Gene ExpressionPEPD [ NCBI-GEO ]     PEPD [ SEEK ]   PEPD [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP12955 (Uniprot)
NextProtP12955  [Medical]  [Publications]
With graphics : InterProP12955
Splice isoforms : SwissVarP12955 (Swissvar)
Catalytic activity : Enzyme3.4.13.9 [ Enzyme-Expasy ]   3.4.13.93.4.13.9 [ IntEnz-EBI ]   3.4.13.9 [ BRENDA ]   3.4.13.9 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)PROLINE_PEPTIDASE (PS00491)   
Domains : Interpro (EBI)Aminopep_P_N    Creatin/AminoP/Spt16_NTD    Creatinase/Aminopeptidase_P_N    Pept_M24_structural-domain    Peptidase_M24B_aminopep-P_CS   
Related proteins : CluSTrP12955
Domain families : Pfam (Sanger)AMP_N (PF05195)    Peptidase_M24 (PF00557)   
Domain families : Pfam (NCBI)pfam05195    pfam00557   
Domain families : Smart (EMBL)AMP_N (SM01011)  
DMDM Disease mutations5184
Blocks (Seattle)P12955
PDB (SRS)2IW2    2OKN   
PDB (PDBSum)2IW2    2OKN   
PDB (IMB)2IW2    2OKN   
PDB (RSDB)2IW2    2OKN   
Human Protein AtlasENSG00000124299
Peptide AtlasP12955
HPRD01358
IPIIPI00257882   IPI00910514   IPI00909399   
Protein Interaction databases
DIP (DOE-UCLA)P12955
IntAct (EBI)P12955
FunCoupENSG00000124299
BioGRIDPEPD
IntegromeDBPEPD
STRING (EMBL)PEPD
Ontologies - Pathways
QuickGOP12955
Ontology : AmiGOaminopeptidase activity  metallocarboxypeptidase activity  proteolysis  cellular amino acid metabolic process  dipeptidase activity  manganese ion binding  collagen catabolic process  extracellular exosome  
Ontology : EGO-EBIaminopeptidase activity  metallocarboxypeptidase activity  proteolysis  cellular amino acid metabolic process  dipeptidase activity  manganese ion binding  collagen catabolic process  extracellular exosome  
Protein Interaction DatabasePEPD
DoCM (Curated mutations)PEPD
Wikipedia pathwaysPEPD
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerPEPD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PEPD
dbVarPEPD
ClinVarPEPD
1000_GenomesPEPD 
Exome Variant ServerPEPD
SNP (GeneSNP Utah)PEPD
SNP : HGBasePEPD
Genetic variants : HAPMAPPEPD
Genomic Variants (DGV)PEPD [DGVbeta]
Mutations
ICGC Data PortalPEPD 
TCGA Data PortalPEPD 
Tumor PortalPEPD
Somatic Mutations in Cancer : COSMICPEPD 
LOVD (Leiden Open Variation Database)genes/PEPD
LOVD (Leiden Open Variation Database)genes/PEPD
LOVD (Leiden Open Variation Database)genes/PEPD
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:33877855-34012799
CONAN: Copy Number AnalysisPEPD 
Mutations and Diseases : HGMDPEPD
OMIM170100    613230   
MedgenPEPD
NextProtP12955 [Medical]
GENETestsPEPD
Disease Genetic AssociationPEPD
Huge Navigator PEPD [HugePedia]  PEPD [HugeCancerGEM]
snp3D : Map Gene to Disease5184
DGIdb (Drug Gene Interaction db)PEPD
BioCentury BCIQPEPD
General knowledge
Homologs : HomoloGenePEPD
Homology/Alignments : Family Browser (UCSC)PEPD
Phylogenetic Trees/Animal Genes : TreeFamPEPD
Chemical/Protein Interactions : CTD5184
Chemical/Pharm GKB GenePA33181
Clinical trialPEPD
Cancer Resource (Charite)ENSG00000124299
Other databases
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
CoreMinePEPD
GoPubMedPEPD
iHOPPEPD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 29 19:05:35 CEST 2015

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