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PER3 (period circadian clock 3)

Identity

Alias_namesperiod (Drosophila) homolog 3
period homolog 3 (Drosophila)
Other aliasFASPS3
GIG13
HGNC (Hugo) PER3
LocusID (NCBI) 8863
Atlas_Id 41691
Location 1p36.23  [Link to chromosome band 1p36]
Location_base_pair Starts at 7844489 and ends at 7905240 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PER3 (1p36.23) / AKAP11 (13q14.11)PER3 (1p36.23) / CAMTA1 (1p36.31)PER3 (1p36.23) / CELA2A (1p36.21)
PER3 (1p36.23) / DNAJC11 (1p36.31)PER3 (1p36.23) / GNAL (18p11.21)PER3 (1p36.23) / PER3 (1p36.23)
PER3 (1p36.23) / PGD (1p36.22)PER3 (1p36.23) / TP53I11 (11p11.2)PER3 1p36.23 / CELA2A 1p36.21
PER3 1p36.23 / DNAJC11 1p36.31PER3 1p36.23 / GNAL 18p11.21PER3 1p36.23 / PGD 1p36.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PER3   8847
Cards
Entrez_Gene (NCBI)PER3  8863  period circadian clock 3
AliasesFASPS3; GIG13
GeneCards (Weizmann)PER3
Ensembl hg19 (Hinxton)ENSG00000049246 [Gene_View]  chr1:7844489-7905240 [Contig_View]  PER3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000049246 [Gene_View]  chr1:7844489-7905240 [Contig_View]  PER3 [Vega]
ICGC DataPortalENSG00000049246
TCGA cBioPortalPER3
AceView (NCBI)PER3
Genatlas (Paris)PER3
WikiGenes8863
SOURCE (Princeton)PER3
Genetics Home Reference (NIH)PER3
Genomic and cartography
GoldenPath hg19 (UCSC)PER3  -     chr1:7844489-7905240 +  1p36.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PER3  -     1p36.23   [Description]    (hg38-Dec_2013)
EnsemblPER3 - 1p36.23 [CytoView hg19]  PER3 - 1p36.23 [CytoView hg38]
Mapping of homologs : NCBIPER3 [Mapview hg19]  PER3 [Mapview hg38]
OMIM603427   
Gene and transcription
Genbank (Entrez)AB047686 AK299123 AK307760 AK308303 AL157954
RefSeq transcript (Entrez)NM_001289861 NM_001289862 NM_001289863 NM_001289864 NM_016831
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_046850 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)PER3
Cluster EST : UnigeneHs.162200 [ NCBI ]
CGAP (NCI)Hs.162200
Alternative Splicing GalleryENSG00000049246
Gene ExpressionPER3 [ NCBI-GEO ]   PER3 [ EBI - ARRAY_EXPRESS ]   PER3 [ SEEK ]   PER3 [ MEM ]
Gene Expression Viewer (FireBrowse)PER3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8863
GTEX Portal (Tissue expression)PER3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56645   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56645  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56645
Splice isoforms : SwissVarP56645
PhosPhoSitePlusP56645
Domaine pattern : Prosite (Expaxy)PAS (PS50112)   
Domains : Interpro (EBI)PAC    PAS    PAS_fold_3    Per_circ_prot_3    Period_circadian-like_C   
Domain families : Pfam (Sanger)PAS_3 (PF08447)    Period_C (PF12114)   
Domain families : Pfam (NCBI)pfam08447    pfam12114   
Domain families : Smart (EMBL)PAC (SM00086)  PAS (SM00091)  
Conserved Domain (NCBI)PER3
DMDM Disease mutations8863
Blocks (Seattle)PER3
SuperfamilyP56645
Human Protein AtlasENSG00000049246
Peptide AtlasP56645
HPRD09138
IPIIPI00828102   IPI00604502   IPI01010724   IPI00644811   
Protein Interaction databases
DIP (DOE-UCLA)P56645
IntAct (EBI)P56645
FunCoupENSG00000049246
BioGRIDPER3
STRING (EMBL)PER3
ZODIACPER3
Ontologies - Pathways
QuickGOP56645
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  protein binding  nucleus  cytoplasm  transcription, DNA-templated  kinase binding  ubiquitin protein ligase binding  circadian regulation of gene expression  regulation of circadian sleep/wake cycle, sleep  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  protein binding  nucleus  cytoplasm  transcription, DNA-templated  kinase binding  ubiquitin protein ligase binding  circadian regulation of gene expression  regulation of circadian sleep/wake cycle, sleep  
Pathways : KEGGCircadian rhythm    Circadian entrainment    Herpes simplex infection   
NDEx NetworkPER3
Atlas of Cancer Signalling NetworkPER3
Wikipedia pathwaysPER3
Orthology - Evolution
OrthoDB8863
GeneTree (enSembl)ENSG00000049246
Phylogenetic Trees/Animal Genes : TreeFamPER3
HOVERGENP56645
HOGENOMP56645
Homologs : HomoloGenePER3
Homology/Alignments : Family Browser (UCSC)PER3
Gene fusions - Rearrangements
Fusion : MitelmanPER3/CELA2A [1p36.23/1p36.21]  
Fusion : MitelmanPER3/DNAJC11 [1p36.23/1p36.31]  [t(1;1)(p36;p36)]  
Fusion : MitelmanPER3/GNAL [1p36.23/18p11.21]  [t(1;18)(p36;p11)]  
Fusion : MitelmanPER3/PGD [1p36.23/1p36.22]  [t(1;1)(p36;p36)]  
Fusion: TCGAPER3 1p36.23 CELA2A 1p36.21 LGG
Fusion: TCGAPER3 1p36.23 DNAJC11 1p36.31 LUAD
Fusion: TCGAPER3 1p36.23 GNAL 18p11.21 LUAD
Fusion: TCGAPER3 1p36.23 PGD 1p36.22 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPER3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PER3
dbVarPER3
ClinVarPER3
1000_GenomesPER3 
Exome Variant ServerPER3
ExAC (Exome Aggregation Consortium)PER3 (select the gene name)
Genetic variants : HAPMAP8863
Genomic Variants (DGV)PER3 [DGVbeta]
DECIPHER (Syndromes)1:7844489-7905240  ENSG00000049246
CONAN: Copy Number AnalysisPER3 
Mutations
ICGC Data PortalPER3 
TCGA Data PortalPER3 
Broad Tumor PortalPER3
OASIS PortalPER3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPER3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPER3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PER3
DgiDB (Drug Gene Interaction Database)PER3
DoCM (Curated mutations)PER3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PER3 (select a term)
intoGenPER3
Cancer3DPER3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603427   
Orphanet17568   
MedgenPER3
Genetic Testing Registry PER3
NextProtP56645 [Medical]
TSGene8863
GENETestsPER3
Huge Navigator PER3 [HugePedia]
snp3D : Map Gene to Disease8863
BioCentury BCIQPER3
ClinGenPER3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8863
Chemical/Pharm GKB GenePA33186
Clinical trialPER3
Miscellaneous
canSAR (ICR)PER3 (select the gene name)
Probes
Litterature
PubMed106 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePER3
EVEXPER3
GoPubMedPER3
iHOPPER3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:03 CEST 2017

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