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PER3 (period circadian regulator 3)

Identity

Alias (NCBI)FASPS3
GIG13
HGNC (Hugo) PER3
HGNC Previous nameperiod (Drosophila) homolog 3
 period homolog 3 (Drosophila)
 period circadian clock 3
LocusID (NCBI) 8863
Atlas_Id 41691
Location 1p36.23  [Link to chromosome band 1p36]
Location_base_pair Starts at 7784291 and ends at 7845177 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PER3 (1p36.23)::AKAP11 (13q14.11)PER3 (1p36.23)::CAMTA1 (1p36.31)PER3 (1p36.23)::CELA2A (1p36.21)
PER3 (1p36.23)::DNAJC11 (1p36.31)PER3 (1p36.23)::GNAL (18p11.21)PER3 (1p36.23)::PER3 (1p36.23)
PER3 (1p36.23)::PGD (1p36.22)PER3 (1p36.23)::TP53I11 (11p11.2)PER3 1p36.23::CELA2A 1p36.21
PER3 1p36.23::DNAJC11 1p36.31PER3 1p36.23::GNAL 18p11.21PER3 1p36.23::PGD 1p36.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PER3   8847
Cards
Entrez_Gene (NCBI)PER3    period circadian regulator 3
AliasesFASPS3; GIG13
GeneCards (Weizmann)PER3
Ensembl hg19 (Hinxton)ENSG00000049246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000049246 [Gene_View]  ENSG00000049246 [Sequence]  chr1:7784291-7845177 [Contig_View]  PER3 [Vega]
ICGC DataPortalENSG00000049246
TCGA cBioPortalPER3
AceView (NCBI)PER3
Genatlas (Paris)PER3
SOURCE (Princeton)PER3
Genetics Home Reference (NIH)PER3
Genomic and cartography
GoldenPath hg38 (UCSC)PER3  -     chr1:7784291-7845177 +  1p36.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PER3  -     1p36.23   [Description]    (hg19-Feb_2009)
GoldenPathPER3 - 1p36.23 [CytoView hg19]  PER3 - 1p36.23 [CytoView hg38]
ImmunoBaseENSG00000049246
Genome Data Viewer NCBIPER3 [Mapview hg19]  
OMIM603427   616882   
Gene and transcription
Genbank (Entrez)AB047686 AK299123 AK307760 AK308303 AL157954
RefSeq transcript (Entrez)NM_001289861 NM_001289862 NM_001289863 NM_001289864 NM_001377275 NM_001377276 NM_016831
Consensus coding sequences : CCDS (NCBI)PER3
Gene ExpressionPER3 [ NCBI-GEO ]   PER3 [ EBI - ARRAY_EXPRESS ]   PER3 [ SEEK ]   PER3 [ MEM ]
Gene Expression Viewer (FireBrowse)PER3 [ Firebrowse - Broad ]
GenevisibleExpression of PER3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8863
GTEX Portal (Tissue expression)PER3
Human Protein AtlasENSG00000049246-PER3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56645   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56645  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56645
PhosPhoSitePlusP56645
Domaine pattern : Prosite (Expaxy)PAS (PS50112)   
Domains : Interpro (EBI)PAS    PAS-like_dom_sf    PAS_fold_3    Per_circ_prot_3    Period_circadian-like_C   
Domain families : Pfam (Sanger)PAS_3 (PF08447)    Period_C (PF12114)   
Domain families : Pfam (NCBI)pfam08447    pfam12114   
Domain families : Smart (EMBL)PAS (SM00091)  
Conserved Domain (NCBI)PER3
SuperfamilyP56645
AlphaFold pdb e-kbP56645   
Human Protein Atlas [tissue]ENSG00000049246-PER3 [tissue]
HPRD09138
Protein Interaction databases
DIP (DOE-UCLA)P56645
IntAct (EBI)P56645
BioGRIDPER3
STRING (EMBL)PER3
ZODIACPER3
Ontologies - Pathways
QuickGOP56645
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  negative regulation of transcription by RNA polymerase II  transcription cis-regulatory region binding  transcription corepressor binding  protein binding  nucleus  nucleus  cytoplasm  cytoplasm  kinase binding  ubiquitin protein ligase binding  circadian regulation of gene expression  entrainment of circadian clock by photoperiod  regulation of circadian sleep/wake cycle, sleep  protein stabilization  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  negative regulation of transcription by RNA polymerase II  transcription cis-regulatory region binding  transcription corepressor binding  protein binding  nucleus  nucleus  cytoplasm  cytoplasm  kinase binding  ubiquitin protein ligase binding  circadian regulation of gene expression  entrainment of circadian clock by photoperiod  regulation of circadian sleep/wake cycle, sleep  protein stabilization  
Pathways : KEGGCircadian rhythm    Circadian entrainment    Herpes simplex infection   
NDEx NetworkPER3
Atlas of Cancer Signalling NetworkPER3
Wikipedia pathwaysPER3
Orthology - Evolution
OrthoDB8863
GeneTree (enSembl)ENSG00000049246
Phylogenetic Trees/Animal Genes : TreeFamPER3
Homologs : HomoloGenePER3
Homology/Alignments : Family Browser (UCSC)PER3
Gene fusions - Rearrangements
Fusion : MitelmanPER3::CELA2A [1p36.23/1p36.21]  
Fusion : MitelmanPER3::DNAJC11 [1p36.23/1p36.31]  
Fusion : MitelmanPER3::GNAL [1p36.23/18p11.21]  
Fusion : MitelmanPER3::PGD [1p36.23/1p36.22]  
Fusion : QuiverPER3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPER3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PER3
dbVarPER3
ClinVarPER3
MonarchPER3
1000_GenomesPER3 
Exome Variant ServerPER3
GNOMAD BrowserENSG00000049246
Varsome BrowserPER3
ACMGPER3 variants
VarityP56645
Genomic Variants (DGV)PER3 [DGVbeta]
DECIPHERPER3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPER3 
Mutations
ICGC Data PortalPER3 
TCGA Data PortalPER3 
Broad Tumor PortalPER3
OASIS PortalPER3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPER3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPER3
Mutations and Diseases : HGMDPER3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPER3
DgiDB (Drug Gene Interaction Database)PER3
DoCM (Curated mutations)PER3
CIViC (Clinical Interpretations of Variants in Cancer)PER3
Cancer3DPER3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603427    616882   
Orphanet17568   
DisGeNETPER3
MedgenPER3
Genetic Testing Registry PER3
NextProtP56645 [Medical]
GENETestsPER3
Target ValidationPER3
Huge Navigator PER3 [HugePedia]
ClinGenPER3
Clinical trials, drugs, therapy
MyCancerGenomePER3
Protein Interactions : CTDPER3
Pharm GKB GenePA33186
PharosP56645
Clinical trialPER3
Miscellaneous
canSAR (ICR)PER3
HarmonizomePER3
ARCHS4PER3
DataMed IndexPER3
Probes
Litterature
PubMed143 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPER3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:27:03 CET 2022

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