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PER3 (period circadian clock 3)

Identity

Other namesGIG13
HGNC (Hugo) PER3
LocusID (NCBI) 8863
Location 1p36.23
Location_base_pair Starts at 7844763 and ends at 7905237 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PER3   8847
Entrez_Gene (NCBI)PER3  8863  period circadian clock 3
Cards
GeneCards (Weizmann)PER3
Ensembl (Hinxton)ENSG00000049246 [Gene_View]  chr1:7844763-7905237 [Contig_View]  PER3 [Vega]
AceView (NCBI)PER3
Genatlas (Paris)PER3
SOURCE (Stanford)NM_016831
Genomic and cartography
GoldenPath (UCSC)PER3  -  1p36.23   chr1:7844763-7905237 +  1p36.23   [Description]    (hg19-Feb_2009)
EnsemblPER3 - 1p36.23 [CytoView]
Mapping of homologs : NCBIPER3 [Mapview]
OMIM603427   
Gene and transcription
Genbank (Entrez)AB047686 AK299123 AK307760 AK308303 AL157954
RefSeq transcript (SRS)NM_016831
RefSeq transcript (Entrez)NM_016831
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_021937 NW_001838523 NW_004077989
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_021937 NW_001838523 NW_004077989
Consensus coding sequences : CCDS (NCBI)PER3
Cluster EST : UnigeneHs.162200 [ SRS ] Hs.162200 [ NCBI ]
CGAP (NCI)Hs.162200
Alternative Splicing : Fast-db (Paris)GSHG0000090
Alternative Splicing GalleryENSG00000049246
Gene ExpressionPER3 [ NCBI-GEO ]   PER3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56645 (SRS) P56645 (Uniprot)
NextProtP56645
With graphics : InterProP56645
Splice isoforms : SwissVarP56645(Swissvar)
Domaine pattern : Prosite (SRS)PAC (PS50113)    PAS (PS50112)   
Domaine pattern : Prosite (Expaxy)PAC (PS50113)    PAS (PS50112)   
Domains : Interpro (SRS)PAC    PAS    PAS_fold_3    Period_circadian-like_C   
Domains : Interpro (EBI)PAC    PAS    PAS_fold_3    Period_circadian-like_C   
Related proteins : CluSTrP56645
Domain families : Pfam (SRS)PAS_3 (PF08447)    Period_C (PF12114)   
Domain families : Pfam (Sanger)PAS_3 (PF08447)    Period_C (PF12114)   
Domain families : Pfam (NCBI)pfam08447    pfam12114   
Domain families : Smart (EMBL)PAC (SM00086)  PAS (SM00091)  
DMDM8863
Blocks (Seattle)P56645
Human Protein AtlasENSG00000049246
HPRD09138
IPIIPI00828102   IPI00604502   IPI01010724   IPI00644811   
Protein Interaction databases
DIP (DOE-UCLA)P56645
IntAct (EBI)P56645
FunCoupENSG00000049246
REACTOMEPER3
Protein Interaction Database8863
BioGRIDPER3
InParanoidP56645
Interologous Interaction database P56645
IntegromeDBPER3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PER3
SNP (GeneSNP Utah)PER3
SNP : HGBasePER3
Genetic variants : HAPMAPPER3
Somatic Mutations in Cancer : COSMICPER3 
CONAN: Copy Number AnalysisPER3 
Mutations and Diseases : HGMDPER3
OMIM603427   
GENETests603427   
Disease Genetic AssociationPER3
Huge Navigator PER3 [HugePedia]  PER3 [HugeCancerGEM]
Genomic VariantsPER3  PER3 [DGVbeta]
snp3D : Map Gene to Disease8863
General knowledge
Homologs : HomoloGenePER3
Homology/Alignments : Family Browser (UCSC)PER3
Phylogenetic Trees/Animal Genes : TreeFamPER3
Chemical/Protein Interactions : CTD8863
Chemical/Pharm GKB GenePA33186
Clinical trialPER3
Cancer Resource (Charite)ENSG00000049246
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  signal transducer activity  nucleus  cytoplasm  transcription, DNA-dependent  circadian rhythm  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  signal transducer activity  nucleus  cytoplasm  transcription, DNA-dependent  circadian rhythm  
Pathways : KEGGCircadian rhythm
Other databases
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
PubGenePER3
iHOPPER3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:42:36 CEST 2013
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