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PET117 (PET117 homolog (S. cerevisiae))

Identity

Alias_namesPET117 homolog (S. cerevisiae)
Alias_symbol (synonym)CSRP2BP
Other alias
HGNC (Hugo) PET117
LocusID (NCBI) 100303755
Atlas_Id 71830
Location 20p11.23  [Link to chromosome band 20p11]
Location_base_pair Starts at 18118499 and ends at 18123812 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DTD1 (20p11.23) / PET117 (20p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PET117   40045
Cards
Entrez_Gene (NCBI)PET117  100303755  PET117 homolog (S. cerevisiae)
AliasesCSRP2BP
GeneCards (Weizmann)PET117
Ensembl hg19 (Hinxton)ENSG00000232838 [Gene_View]  chr20:18118499-18123812 [Contig_View]  PET117 [Vega]
Ensembl hg38 (Hinxton)ENSG00000232838 [Gene_View]  chr20:18118499-18123812 [Contig_View]  PET117 [Vega]
ICGC DataPortalENSG00000232838
TCGA cBioPortalPET117
AceView (NCBI)PET117
Genatlas (Paris)PET117
WikiGenes100303755
SOURCE (Princeton)PET117
Genetics Home Reference (NIH)PET117
Genomic and cartography
GoldenPath hg19 (UCSC)PET117  -     chr20:18118499-18123812 +  20p11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PET117  -     20p11.23   [Description]    (hg38-Dec_2013)
EnsemblPET117 - 20p11.23 [CytoView hg19]  PET117 - 20p11.23 [CytoView hg38]
Mapping of homologs : NCBIPET117 [Mapview hg19]  PET117 [Mapview hg38]
OMIM614771   
Gene and transcription
Genbank (Entrez)AY358666 BI601826 BM984163
RefSeq transcript (Entrez)NM_001164811
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)PET117
Cluster EST : UnigeneHs.488051 [ NCBI ]
CGAP (NCI)Hs.488051
Alternative Splicing GalleryENSG00000232838
Gene ExpressionPET117 [ NCBI-GEO ]   PET117 [ EBI - ARRAY_EXPRESS ]   PET117 [ SEEK ]   PET117 [ MEM ]
Gene Expression Viewer (FireBrowse)PET117 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100303755
GTEX Portal (Tissue expression)PET117
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWS5
Splice isoforms : SwissVarQ6UWS5
PhosPhoSitePlusQ6UWS5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PET117
DMDM Disease mutations100303755
Blocks (Seattle)PET117
SuperfamilyQ6UWS5
Human Protein AtlasENSG00000232838
Peptide AtlasQ6UWS5
IPIIPI00432368   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWS5
IntAct (EBI)Q6UWS5
FunCoupENSG00000232838
BioGRIDPET117
STRING (EMBL)PET117
ZODIACPET117
Ontologies - Pathways
QuickGOQ6UWS5
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkPET117
Atlas of Cancer Signalling NetworkPET117
Wikipedia pathwaysPET117
Orthology - Evolution
OrthoDB100303755
GeneTree (enSembl)ENSG00000232838
Phylogenetic Trees/Animal Genes : TreeFamPET117
HOVERGENQ6UWS5
HOGENOMQ6UWS5
Homologs : HomoloGenePET117
Homology/Alignments : Family Browser (UCSC)PET117
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPET117 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PET117
dbVarPET117
ClinVarPET117
1000_GenomesPET117 
Exome Variant ServerPET117
ExAC (Exome Aggregation Consortium)PET117 (select the gene name)
Genetic variants : HAPMAP100303755
Genomic Variants (DGV)PET117 [DGVbeta]
DECIPHER (Syndromes)20:18118499-18123812  ENSG00000232838
CONAN: Copy Number AnalysisPET117 
Mutations
ICGC Data PortalPET117 
TCGA Data PortalPET117 
Broad Tumor PortalPET117
OASIS PortalPET117 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPET117  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPET117
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PET117
DgiDB (Drug Gene Interaction Database)PET117
DoCM (Curated mutations)PET117 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PET117 (select a term)
intoGenPET117
Cancer3DPET117(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614771   
Orphanet
MedgenPET117
Genetic Testing Registry PET117
NextProtQ6UWS5 [Medical]
TSGene100303755
GENETestsPET117
Huge Navigator PET117 [HugePedia]
snp3D : Map Gene to Disease100303755
BioCentury BCIQPET117
ClinGenPET117
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100303755
Clinical trialPET117
Miscellaneous
canSAR (ICR)PET117 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePET117
EVEXPET117
GoPubMedPET117
iHOPPET117
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:20 CET 2017

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