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PET117 (PET117 homolog)

Identity

Alias_namesPET117 homolog (S. cerevisiae)
Alias_symbol (synonym)CSRP2BP
Other alias
HGNC (Hugo) PET117
LocusID (NCBI) 100303755
Atlas_Id 71830
Location 20p11.23  [Link to chromosome band 20p11]
Location_base_pair Starts at 18137855 and ends at 18143168 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DTD1 (20p11.23) / PET117 (20p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PET117   40045
Cards
Entrez_Gene (NCBI)PET117  100303755  PET117 homolog
AliasesCSRP2BP
GeneCards (Weizmann)PET117
Ensembl hg19 (Hinxton)ENSG00000232838 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232838 [Gene_View]  chr20:18137855-18143168 [Contig_View]  PET117 [Vega]
ICGC DataPortalENSG00000232838
TCGA cBioPortalPET117
AceView (NCBI)PET117
Genatlas (Paris)PET117
WikiGenes100303755
SOURCE (Princeton)PET117
Genetics Home Reference (NIH)PET117
Genomic and cartography
GoldenPath hg38 (UCSC)PET117  -     chr20:18137855-18143168 +  20p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PET117  -     20p11.23   [Description]    (hg19-Feb_2009)
EnsemblPET117 - 20p11.23 [CytoView hg19]  PET117 - 20p11.23 [CytoView hg38]
Mapping of homologs : NCBIPET117 [Mapview hg19]  PET117 [Mapview hg38]
OMIM614771   
Gene and transcription
Genbank (Entrez)AY358666 BI601826 BM984163
RefSeq transcript (Entrez)NM_001164811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PET117
Cluster EST : UnigeneHs.488051 [ NCBI ]
CGAP (NCI)Hs.488051
Alternative Splicing GalleryENSG00000232838
Gene ExpressionPET117 [ NCBI-GEO ]   PET117 [ EBI - ARRAY_EXPRESS ]   PET117 [ SEEK ]   PET117 [ MEM ]
Gene Expression Viewer (FireBrowse)PET117 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100303755
GTEX Portal (Tissue expression)PET117
Human Protein AtlasENSG00000232838-PET117 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWS5
Splice isoforms : SwissVarQ6UWS5
PhosPhoSitePlusQ6UWS5
Domains : Interpro (EBI)Pet117   
Domain families : Pfam (Sanger)PET117 (PF15786)   
Domain families : Pfam (NCBI)pfam15786   
Conserved Domain (NCBI)PET117
DMDM Disease mutations100303755
Blocks (Seattle)PET117
SuperfamilyQ6UWS5
Human Protein Atlas [tissue]ENSG00000232838-PET117 [tissue]
Peptide AtlasQ6UWS5
IPIIPI00432368   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWS5
IntAct (EBI)Q6UWS5
FunCoupENSG00000232838
BioGRIDPET117
STRING (EMBL)PET117
ZODIACPET117
Ontologies - Pathways
QuickGOQ6UWS5
Ontology : AmiGOmitochondrion  mitochondrial respiratory chain complex IV assembly  
Ontology : EGO-EBImitochondrion  mitochondrial respiratory chain complex IV assembly  
NDEx NetworkPET117
Atlas of Cancer Signalling NetworkPET117
Wikipedia pathwaysPET117
Orthology - Evolution
OrthoDB100303755
GeneTree (enSembl)ENSG00000232838
Phylogenetic Trees/Animal Genes : TreeFamPET117
HOVERGENQ6UWS5
HOGENOMQ6UWS5
Homologs : HomoloGenePET117
Homology/Alignments : Family Browser (UCSC)PET117
Gene fusions - Rearrangements
Fusion: Tumor Portal PET117
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPET117 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PET117
dbVarPET117
ClinVarPET117
1000_GenomesPET117 
Exome Variant ServerPET117
ExAC (Exome Aggregation Consortium)ENSG00000232838
GNOMAD BrowserENSG00000232838
Genetic variants : HAPMAP100303755
Genomic Variants (DGV)PET117 [DGVbeta]
DECIPHERPET117 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPET117 
Mutations
ICGC Data PortalPET117 
TCGA Data PortalPET117 
Broad Tumor PortalPET117
OASIS PortalPET117 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPET117  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPET117
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PET117
DgiDB (Drug Gene Interaction Database)PET117
DoCM (Curated mutations)PET117 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PET117 (select a term)
intoGenPET117
Cancer3DPET117(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614771   
Orphanet
MedgenPET117
Genetic Testing Registry PET117
NextProtQ6UWS5 [Medical]
TSGene100303755
GENETestsPET117
Target ValidationPET117
Huge Navigator PET117 [HugePedia]
snp3D : Map Gene to Disease100303755
BioCentury BCIQPET117
ClinGenPET117
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100303755
Chemical/Pharm GKB GenePA166049064
Clinical trialPET117
Miscellaneous
canSAR (ICR)PET117 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePET117
EVEXPET117
GoPubMedPET117
iHOPPET117
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:22:15 CET 2017

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