Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PEX10 (peroxisomal biogenesis factor 10)

Identity

Alias_namesperoxisome biogenesis factor 10
Alias_symbol (synonym)RNF69
Other aliasNALD
PBD6A
PBD6B
HGNC (Hugo) PEX10
LocusID (NCBI) 5192
Atlas_Id 71832
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 2404802 and ends at 2412571 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PEX10 (1p36.32) / PECAM1 (17q23.3)PEX10 (1p36.32) / PEX10 (1p36.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PEX10   8851
Cards
Entrez_Gene (NCBI)PEX10  5192  peroxisomal biogenesis factor 10
AliasesNALD; PBD6A; PBD6B; RNF69
GeneCards (Weizmann)PEX10
Ensembl hg19 (Hinxton)ENSG00000157911 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157911 [Gene_View]  chr1:2404802-2412571 [Contig_View]  PEX10 [Vega]
ICGC DataPortalENSG00000157911
TCGA cBioPortalPEX10
AceView (NCBI)PEX10
Genatlas (Paris)PEX10
WikiGenes5192
SOURCE (Princeton)PEX10
Genetics Home Reference (NIH)PEX10
Genomic and cartography
GoldenPath hg38 (UCSC)PEX10  -     chr1:2404802-2412571 -  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PEX10  -     1p36.32   [Description]    (hg19-Feb_2009)
EnsemblPEX10 - 1p36.32 [CytoView hg19]  PEX10 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBIPEX10 [Mapview hg19]  PEX10 [Mapview hg38]
OMIM602859   614870   614871   
Gene and transcription
Genbank (Entrez)AB013818 AF060502 AK124816 BC000543 BC018198
RefSeq transcript (Entrez)NM_002617 NM_153818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PEX10
Cluster EST : UnigeneHs.732228 [ NCBI ]
CGAP (NCI)Hs.732228
Alternative Splicing GalleryENSG00000157911
Gene ExpressionPEX10 [ NCBI-GEO ]   PEX10 [ EBI - ARRAY_EXPRESS ]   PEX10 [ SEEK ]   PEX10 [ MEM ]
Gene Expression Viewer (FireBrowse)PEX10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5192
GTEX Portal (Tissue expression)PEX10
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60683   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60683  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60683
Splice isoforms : SwissVarO60683
PhosPhoSitePlusO60683
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)PEX10    Pex_N    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)Pex2_Pex12 (PF04757)   
Domain families : Pfam (NCBI)pfam04757   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)PEX10
DMDM Disease mutations5192
Blocks (Seattle)PEX10
SuperfamilyO60683
Human Protein AtlasENSG00000157911
Peptide AtlasO60683
HPRD04175
IPIIPI00031033   IPI00220987   IPI00966264   IPI00967531   IPI00965933   
Protein Interaction databases
DIP (DOE-UCLA)O60683
IntAct (EBI)O60683
FunCoupENSG00000157911
BioGRIDPEX10
STRING (EMBL)PEX10
ZODIACPEX10
Ontologies - Pathways
QuickGOO60683
Ontology : AmiGOprotein binding  peroxisome  peroxisomal membrane  integral component of peroxisomal membrane  peroxisome organization  zinc ion binding  protein import into peroxisome matrix  
Ontology : EGO-EBIprotein binding  peroxisome  peroxisomal membrane  integral component of peroxisomal membrane  peroxisome organization  zinc ion binding  protein import into peroxisome matrix  
Pathways : KEGGPeroxisome   
NDEx NetworkPEX10
Atlas of Cancer Signalling NetworkPEX10
Wikipedia pathwaysPEX10
Orthology - Evolution
OrthoDB5192
GeneTree (enSembl)ENSG00000157911
Phylogenetic Trees/Animal Genes : TreeFamPEX10
HOVERGENO60683
HOGENOMO60683
Homologs : HomoloGenePEX10
Homology/Alignments : Family Browser (UCSC)PEX10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPEX10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PEX10
dbVarPEX10
ClinVarPEX10
1000_GenomesPEX10 
Exome Variant ServerPEX10
ExAC (Exome Aggregation Consortium)PEX10 (select the gene name)
Genetic variants : HAPMAP5192
Genomic Variants (DGV)PEX10 [DGVbeta]
DECIPHERPEX10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPEX10 
Mutations
ICGC Data PortalPEX10 
TCGA Data PortalPEX10 
Broad Tumor PortalPEX10
OASIS PortalPEX10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPEX10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPEX10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)dbPEX, PEX Gene Database
BioMutasearch PEX10
DgiDB (Drug Gene Interaction Database)PEX10
DoCM (Curated mutations)PEX10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PEX10 (select a term)
intoGenPEX10
Cancer3DPEX10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602859    614870    614871   
Orphanet225    410    19551    5016   
MedgenPEX10
Genetic Testing Registry PEX10
NextProtO60683 [Medical]
TSGene5192
GENETestsPEX10
Target ValidationPEX10
Huge Navigator PEX10 [HugePedia]
snp3D : Map Gene to Disease5192
BioCentury BCIQPEX10
ClinGenPEX10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5192
Chemical/Pharm GKB GenePA33193
Clinical trialPEX10
Miscellaneous
canSAR (ICR)PEX10 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePEX10
EVEXPEX10
GoPubMedPEX10
iHOPPEX10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:04 CEST 2017

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