Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PEX11A (peroxisomal biogenesis factor 11 alpha)

Identity

Alias_namesperoxisomal biogenesis factor 11A
Alias_symbol (synonym)PEX11-ALPHA
MGC119947
MGC138534
Other aliasPMP28
hsPEX11p
HGNC (Hugo) PEX11A
LocusID (NCBI) 8800
Atlas_Id 56585
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 89681531 and ends at 89690784 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PEX11A   8852
Cards
Entrez_Gene (NCBI)PEX11A  8800  peroxisomal biogenesis factor 11 alpha
AliasesPEX11-ALPHA; PMP28; hsPEX11p
GeneCards (Weizmann)PEX11A
Ensembl hg19 (Hinxton)ENSG00000166821 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166821 [Gene_View]  chr15:89681531-89690784 [Contig_View]  PEX11A [Vega]
ICGC DataPortalENSG00000166821
TCGA cBioPortalPEX11A
AceView (NCBI)PEX11A
Genatlas (Paris)PEX11A
WikiGenes8800
SOURCE (Princeton)PEX11A
Genetics Home Reference (NIH)PEX11A
Genomic and cartography
GoldenPath hg38 (UCSC)PEX11A  -     chr15:89681531-89690784 -  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PEX11A  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblPEX11A - 15q26.1 [CytoView hg19]  PEX11A - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIPEX11A [Mapview hg19]  PEX11A [Mapview hg38]
OMIM603866   
Gene and transcription
Genbank (Entrez)AB015594 AF093668 AI494060 AK001415 AK297442
RefSeq transcript (Entrez)NM_001271572 NM_001271573 NM_003847
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PEX11A
Cluster EST : UnigeneHs.31034 [ NCBI ]
CGAP (NCI)Hs.31034
Alternative Splicing GalleryENSG00000166821
Gene ExpressionPEX11A [ NCBI-GEO ]   PEX11A [ EBI - ARRAY_EXPRESS ]   PEX11A [ SEEK ]   PEX11A [ MEM ]
Gene Expression Viewer (FireBrowse)PEX11A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8800
GTEX Portal (Tissue expression)PEX11A
Human Protein AtlasENSG00000166821-PEX11A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75192   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75192  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75192
Splice isoforms : SwissVarO75192
PhosPhoSitePlusO75192
Domains : Interpro (EBI)PEX11   
Domain families : Pfam (Sanger)PEX11 (PF05648)   
Domain families : Pfam (NCBI)pfam05648   
Conserved Domain (NCBI)PEX11A
DMDM Disease mutations8800
Blocks (Seattle)PEX11A
SuperfamilyO75192
Human Protein Atlas [tissue]ENSG00000166821-PEX11A [tissue]
Peptide AtlasO75192
HPRD04843
IPIIPI00021979   
Protein Interaction databases
DIP (DOE-UCLA)O75192
IntAct (EBI)O75192
FunCoupENSG00000166821
BioGRIDPEX11A
STRING (EMBL)PEX11A
ZODIACPEX11A
Ontologies - Pathways
QuickGOO75192
Ontology : AmiGOprotein binding  peroxisome  peroxisomal membrane  integral component of peroxisomal membrane  peroxisome organization  signal transduction  peroxisome membrane biogenesis  peroxisome fission  protein homodimerization activity  protein complex  regulation of peroxisome size  brown fat cell differentiation  
Ontology : EGO-EBIprotein binding  peroxisome  peroxisomal membrane  integral component of peroxisomal membrane  peroxisome organization  signal transduction  peroxisome membrane biogenesis  peroxisome fission  protein homodimerization activity  protein complex  regulation of peroxisome size  brown fat cell differentiation  
Pathways : KEGGPeroxisome   
NDEx NetworkPEX11A
Atlas of Cancer Signalling NetworkPEX11A
Wikipedia pathwaysPEX11A
Orthology - Evolution
OrthoDB8800
GeneTree (enSembl)ENSG00000166821
Phylogenetic Trees/Animal Genes : TreeFamPEX11A
HOVERGENO75192
HOGENOMO75192
Homologs : HomoloGenePEX11A
Homology/Alignments : Family Browser (UCSC)PEX11A
Gene fusions - Rearrangements
Tumor Fusion PortalPEX11A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPEX11A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PEX11A
dbVarPEX11A
ClinVarPEX11A
1000_GenomesPEX11A 
Exome Variant ServerPEX11A
ExAC (Exome Aggregation Consortium)ENSG00000166821
GNOMAD BrowserENSG00000166821
Genetic variants : HAPMAP8800
Genomic Variants (DGV)PEX11A [DGVbeta]
DECIPHERPEX11A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPEX11A 
Mutations
ICGC Data PortalPEX11A 
TCGA Data PortalPEX11A 
Broad Tumor PortalPEX11A
OASIS PortalPEX11A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPEX11A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPEX11A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PEX11A
DgiDB (Drug Gene Interaction Database)PEX11A
DoCM (Curated mutations)PEX11A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PEX11A (select a term)
intoGenPEX11A
Cancer3DPEX11A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603866   
Orphanet
DisGeNETPEX11A
MedgenPEX11A
Genetic Testing Registry PEX11A
NextProtO75192 [Medical]
TSGene8800
GENETestsPEX11A
Target ValidationPEX11A
Huge Navigator PEX11A [HugePedia]
snp3D : Map Gene to Disease8800
BioCentury BCIQPEX11A
ClinGenPEX11A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8800
Chemical/Pharm GKB GenePA33194
Clinical trialPEX11A
Miscellaneous
canSAR (ICR)PEX11A (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePEX11A
EVEXPEX11A
GoPubMedPEX11A
iHOPPEX11A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:28:24 CET 2017

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