Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PEX11B (peroxisomal biogenesis factor 11 beta)

Identity

Alias (NCBI)PEX11-BETA
PEX14B
HGNC (Hugo) PEX11B
HGNC Previous nameperoxisomal biogenesis factor 11B
LocusID (NCBI) 8799
Atlas_Id 56126
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 145911350 and ends at 145918717 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PEX11B (1q21.1) / DNAJC11 (1p36.31)PEX11B (1q21.1) / TPP1 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PEX11B   8853
Cards
Entrez_Gene (NCBI)PEX11B  8799  peroxisomal biogenesis factor 11 beta
AliasesPEX11-BETA; PEX14B
GeneCards (Weizmann)PEX11B
Ensembl hg19 (Hinxton)ENSG00000131779 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131779 [Gene_View]  ENSG00000131779 [Sequence]  chr1:145911350-145918717 [Contig_View]  PEX11B [Vega]
ICGC DataPortalENSG00000131779
TCGA cBioPortalPEX11B
AceView (NCBI)PEX11B
Genatlas (Paris)PEX11B
WikiGenes8799
SOURCE (Princeton)PEX11B
Genetics Home Reference (NIH)PEX11B
Genomic and cartography
GoldenPath hg38 (UCSC)PEX11B  -     chr1:145911350-145918717 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PEX11B  -     1q21.1   [Description]    (hg19-Feb_2009)
GoldenPathPEX11B - 1q21.1 [CytoView hg19]  PEX11B - 1q21.1 [CytoView hg38]
ImmunoBaseENSG00000131779
genome Data Viewer NCBIPEX11B [Mapview hg19]  
OMIM603867   614920   
Gene and transcription
Genbank (Entrez)AB018080 AF093670 AK023991 AK094173 AK301983
RefSeq transcript (Entrez)NM_001184795 NM_003846
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PEX11B
Alternative Splicing GalleryENSG00000131779
Gene ExpressionPEX11B [ NCBI-GEO ]   PEX11B [ EBI - ARRAY_EXPRESS ]   PEX11B [ SEEK ]   PEX11B [ MEM ]
Gene Expression Viewer (FireBrowse)PEX11B [ Firebrowse - Broad ]
GenevisibleExpression of PEX11B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8799
GTEX Portal (Tissue expression)PEX11B
Human Protein AtlasENSG00000131779-PEX11B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO96011   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO96011  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO96011
Splice isoforms : SwissVarO96011
PhosPhoSitePlusO96011
Domains : Interpro (EBI)PEX11   
Domain families : Pfam (Sanger)PEX11 (PF05648)   
Domain families : Pfam (NCBI)pfam05648   
Conserved Domain (NCBI)PEX11B
DMDM Disease mutations8799
Blocks (Seattle)PEX11B
SuperfamilyO96011
Human Protein Atlas [tissue]ENSG00000131779-PEX11B [tissue]
Peptide AtlasO96011
HPRD04844
IPIIPI00021978   IPI00645949   
Protein Interaction databases
DIP (DOE-UCLA)O96011
IntAct (EBI)O96011
FunCoupENSG00000131779
BioGRIDPEX11B
STRING (EMBL)PEX11B
ZODIACPEX11B
Ontologies - Pathways
QuickGOO96011
Ontology : AmiGOprotein binding  mitochondrion  peroxisome  peroxisomal membrane  peroxisomal membrane  integral component of peroxisomal membrane  integral component of peroxisomal membrane  peroxisome organization  peroxisome organization  signal transduction  membrane  peroxisome fission  peroxisome fission  protein-containing complex  identical protein binding  protein homodimerization activity  intracellular membrane-bounded organelle  regulation of peroxisome size  regulation of peroxisome size  
Ontology : EGO-EBIprotein binding  mitochondrion  peroxisome  peroxisomal membrane  peroxisomal membrane  integral component of peroxisomal membrane  integral component of peroxisomal membrane  peroxisome organization  peroxisome organization  signal transduction  membrane  peroxisome fission  peroxisome fission  protein-containing complex  identical protein binding  protein homodimerization activity  intracellular membrane-bounded organelle  regulation of peroxisome size  regulation of peroxisome size  
Pathways : KEGGPeroxisome   
NDEx NetworkPEX11B
Atlas of Cancer Signalling NetworkPEX11B
Wikipedia pathwaysPEX11B
Orthology - Evolution
OrthoDB8799
GeneTree (enSembl)ENSG00000131779
Phylogenetic Trees/Animal Genes : TreeFamPEX11B
HOGENOMO96011
Homologs : HomoloGenePEX11B
Homology/Alignments : Family Browser (UCSC)PEX11B
Gene fusions - Rearrangements
Fusion : QuiverPEX11B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPEX11B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PEX11B
dbVarPEX11B
ClinVarPEX11B
1000_GenomesPEX11B 
Exome Variant ServerPEX11B
GNOMAD BrowserENSG00000131779
Varsome BrowserPEX11B
Genetic variants : HAPMAP8799
Genomic Variants (DGV)PEX11B [DGVbeta]
DECIPHERPEX11B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPEX11B 
Mutations
ICGC Data PortalPEX11B 
TCGA Data PortalPEX11B 
Broad Tumor PortalPEX11B
OASIS PortalPEX11B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPEX11B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPEX11B
Mutations and Diseases : HGMDPEX11B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch PEX11B
DgiDB (Drug Gene Interaction Database)PEX11B
DoCM (Curated mutations)PEX11B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PEX11B (select a term)
intoGenPEX11B
Cancer3DPEX11B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603867    614920   
Orphanet225    410    5016   
DisGeNETPEX11B
MedgenPEX11B
Genetic Testing Registry PEX11B
NextProtO96011 [Medical]
TSGene8799
GENETestsPEX11B
Target ValidationPEX11B
Huge Navigator PEX11B [HugePedia]
snp3D : Map Gene to Disease8799
BioCentury BCIQPEX11B
ClinGenPEX11B
Clinical trials, drugs, therapy
Protein Interactions : CTD8799
Pharm GKB GenePA33195
Clinical trialPEX11B
Miscellaneous
canSAR (ICR)PEX11B (select the gene name)
HarmonizomePEX11B
DataMed IndexPEX11B
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePEX11B
EVEXPEX11B
GoPubMedPEX11B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:29:24 CEST 2020

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