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PEX11G (peroxisomal biogenesis factor 11 gamma)

Identity

Other alias-
HGNC (Hugo) PEX11G
LocusID (NCBI) 92960
Atlas_Id 56107
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7541756 and ends at 7553924 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PEX11G   20208
Cards
Entrez_Gene (NCBI)PEX11G  92960  peroxisomal biogenesis factor 11 gamma
Aliases
GeneCards (Weizmann)PEX11G
Ensembl hg19 (Hinxton)ENSG00000104883 [Gene_View]  chr19:7541756-7553924 [Contig_View]  PEX11G [Vega]
Ensembl hg38 (Hinxton)ENSG00000104883 [Gene_View]  chr19:7541756-7553924 [Contig_View]  PEX11G [Vega]
ICGC DataPortalENSG00000104883
TCGA cBioPortalPEX11G
AceView (NCBI)PEX11G
Genatlas (Paris)PEX11G
WikiGenes92960
SOURCE (Princeton)PEX11G
Genetics Home Reference (NIH)PEX11G
Genomic and cartography
GoldenPath hg19 (UCSC)PEX11G  -     chr19:7541756-7553924 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PEX11G  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblPEX11G - 19p13.2 [CytoView hg19]  PEX11G - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIPEX11G [Mapview hg19]  PEX11G [Mapview hg38]
OMIM607583   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001270539 NM_001300881 NM_080662
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PEX11G
Cluster EST : UnigeneHs.515100 [ NCBI ]
CGAP (NCI)Hs.515100
Alternative Splicing GalleryENSG00000104883
Gene ExpressionPEX11G [ NCBI-GEO ]   PEX11G [ EBI - ARRAY_EXPRESS ]   PEX11G [ SEEK ]   PEX11G [ MEM ]
Gene Expression Viewer (FireBrowse)PEX11G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92960
GTEX Portal (Tissue expression)PEX11G
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HA9
Splice isoforms : SwissVarQ96HA9
PhosPhoSitePlusQ96HA9
Domains : Interpro (EBI)PEX11    PEX11C_met   
Domain families : Pfam (Sanger)PEX11 (PF05648)   
Domain families : Pfam (NCBI)pfam05648   
Conserved Domain (NCBI)PEX11G
DMDM Disease mutations92960
Blocks (Seattle)PEX11G
SuperfamilyQ96HA9
Human Protein AtlasENSG00000104883
Peptide AtlasQ96HA9
HPRD16250
IPIIPI00062958   IPI00556568   
Protein Interaction databases
DIP (DOE-UCLA)Q96HA9
IntAct (EBI)Q96HA9
FunCoupENSG00000104883
BioGRIDPEX11G
STRING (EMBL)PEX11G
ZODIACPEX11G
Ontologies - Pathways
QuickGOQ96HA9
Ontology : AmiGOprotein binding  peroxisome  integral component of peroxisomal membrane  peroxisome fission  intrinsic component of peroxisomal membrane  protein complex  regulation of peroxisome size  
Ontology : EGO-EBIprotein binding  peroxisome  integral component of peroxisomal membrane  peroxisome fission  intrinsic component of peroxisomal membrane  protein complex  regulation of peroxisome size  
Pathways : KEGGPeroxisome   
NDEx NetworkPEX11G
Atlas of Cancer Signalling NetworkPEX11G
Wikipedia pathwaysPEX11G
Orthology - Evolution
OrthoDB92960
GeneTree (enSembl)ENSG00000104883
Phylogenetic Trees/Animal Genes : TreeFamPEX11G
HOVERGENQ96HA9
HOGENOMQ96HA9
Homologs : HomoloGenePEX11G
Homology/Alignments : Family Browser (UCSC)PEX11G
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPEX11G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PEX11G
dbVarPEX11G
ClinVarPEX11G
1000_GenomesPEX11G 
Exome Variant ServerPEX11G
ExAC (Exome Aggregation Consortium)PEX11G (select the gene name)
Genetic variants : HAPMAP92960
Genomic Variants (DGV)PEX11G [DGVbeta]
DECIPHER (Syndromes)19:7541756-7553924  ENSG00000104883
CONAN: Copy Number AnalysisPEX11G 
Mutations
ICGC Data PortalPEX11G 
TCGA Data PortalPEX11G 
Broad Tumor PortalPEX11G
OASIS PortalPEX11G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPEX11G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPEX11G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PEX11G
DgiDB (Drug Gene Interaction Database)PEX11G
DoCM (Curated mutations)PEX11G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PEX11G (select a term)
intoGenPEX11G
Cancer3DPEX11G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607583   
Orphanet
MedgenPEX11G
Genetic Testing Registry PEX11G
NextProtQ96HA9 [Medical]
TSGene92960
GENETestsPEX11G
Huge Navigator PEX11G [HugePedia]
snp3D : Map Gene to Disease92960
BioCentury BCIQPEX11G
ClinGenPEX11G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92960
Chemical/Pharm GKB GenePA134987796
Clinical trialPEX11G
Miscellaneous
canSAR (ICR)PEX11G (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePEX11G
EVEXPEX11G
GoPubMedPEX11G
iHOPPEX11G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:03 CEST 2017

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