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PEX16 (peroxisomal biogenesis factor 16)

Identity

Other aliasPBD8A
PBD8B
HGNC (Hugo) PEX16
LocusID (NCBI) 9409
Atlas_Id 71838
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 45931220 and ends at 45939674 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PEX16 (11p11.2) / PEX16 (11p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PEX16   8857
Cards
Entrez_Gene (NCBI)PEX16  9409  peroxisomal biogenesis factor 16
AliasesPBD8A; PBD8B
GeneCards (Weizmann)PEX16
Ensembl hg19 (Hinxton)ENSG00000121680 [Gene_View]  chr11:45931220-45939674 [Contig_View]  PEX16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000121680 [Gene_View]  chr11:45931220-45939674 [Contig_View]  PEX16 [Vega]
ICGC DataPortalENSG00000121680
TCGA cBioPortalPEX16
AceView (NCBI)PEX16
Genatlas (Paris)PEX16
WikiGenes9409
SOURCE (Princeton)PEX16
Genetics Home Reference (NIH)PEX16
Genomic and cartography
GoldenPath hg19 (UCSC)PEX16  -     chr11:45931220-45939674 -  11p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PEX16  -     11p11.2   [Description]    (hg38-Dec_2013)
EnsemblPEX16 - 11p11.2 [CytoView hg19]  PEX16 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIPEX16 [Mapview hg19]  PEX16 [Mapview hg38]
OMIM603360   614876   614877   
Gene and transcription
Genbank (Entrez)AB016531 AF118240 BC000467 BC004356 BM746616
RefSeq transcript (Entrez)NM_004813 NM_057174
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_008460 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)PEX16
Cluster EST : UnigeneHs.100915 [ NCBI ]
CGAP (NCI)Hs.100915
Alternative Splicing GalleryENSG00000121680
Gene ExpressionPEX16 [ NCBI-GEO ]   PEX16 [ EBI - ARRAY_EXPRESS ]   PEX16 [ SEEK ]   PEX16 [ MEM ]
Gene Expression Viewer (FireBrowse)PEX16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9409
GTEX Portal (Tissue expression)PEX16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5Y5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5Y5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5Y5
Splice isoforms : SwissVarQ9Y5Y5
PhosPhoSitePlusQ9Y5Y5
Domains : Interpro (EBI)Pex16   
Domain families : Pfam (Sanger)Pex16 (PF08610)   
Domain families : Pfam (NCBI)pfam08610   
Conserved Domain (NCBI)PEX16
DMDM Disease mutations9409
Blocks (Seattle)PEX16
SuperfamilyQ9Y5Y5
Human Protein AtlasENSG00000121680
Peptide AtlasQ9Y5Y5
HPRD04526
IPIIPI00006722   IPI00386861   IPI00982425   IPI00978739   IPI00985308   IPI00981086   IPI00978099   IPI00984747   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5Y5
IntAct (EBI)Q9Y5Y5
FunCoupENSG00000121680
BioGRIDPEX16
STRING (EMBL)PEX16
ZODIACPEX16
Ontologies - Pathways
QuickGOQ9Y5Y5
Ontology : AmiGOprotein binding  peroxisome  peroxisomal membrane  integral component of peroxisomal membrane  integral component of peroxisomal membrane  endoplasmic reticulum  endoplasmic reticulum membrane  protein targeting to peroxisome  peroxisome organization  protein C-terminus binding  membrane  peroxisome membrane biogenesis  protein import into peroxisome matrix  protein to membrane docking  ER-dependent peroxisome organization  protein import into peroxisome membrane  protein localization to endoplasmic reticulum  
Ontology : EGO-EBIprotein binding  peroxisome  peroxisomal membrane  integral component of peroxisomal membrane  integral component of peroxisomal membrane  endoplasmic reticulum  endoplasmic reticulum membrane  protein targeting to peroxisome  peroxisome organization  protein C-terminus binding  membrane  peroxisome membrane biogenesis  protein import into peroxisome matrix  protein to membrane docking  ER-dependent peroxisome organization  protein import into peroxisome membrane  protein localization to endoplasmic reticulum  
Pathways : KEGGPeroxisome   
NDEx NetworkPEX16
Atlas of Cancer Signalling NetworkPEX16
Wikipedia pathwaysPEX16
Orthology - Evolution
OrthoDB9409
GeneTree (enSembl)ENSG00000121680
Phylogenetic Trees/Animal Genes : TreeFamPEX16
HOVERGENQ9Y5Y5
HOGENOMQ9Y5Y5
Homologs : HomoloGenePEX16
Homology/Alignments : Family Browser (UCSC)PEX16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPEX16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PEX16
dbVarPEX16
ClinVarPEX16
1000_GenomesPEX16 
Exome Variant ServerPEX16
ExAC (Exome Aggregation Consortium)PEX16 (select the gene name)
Genetic variants : HAPMAP9409
Genomic Variants (DGV)PEX16 [DGVbeta]
DECIPHER (Syndromes)11:45931220-45939674  ENSG00000121680
CONAN: Copy Number AnalysisPEX16 
Mutations
ICGC Data PortalPEX16 
TCGA Data PortalPEX16 
Broad Tumor PortalPEX16
OASIS PortalPEX16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPEX16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPEX16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)dbPEX, PEX Gene Database
BioMutasearch PEX16
DgiDB (Drug Gene Interaction Database)PEX16
DoCM (Curated mutations)PEX16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PEX16 (select a term)
intoGenPEX16
Cancer3DPEX16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603360    614876    614877   
Orphanet225    410    5016   
MedgenPEX16
Genetic Testing Registry PEX16
NextProtQ9Y5Y5 [Medical]
TSGene9409
GENETestsPEX16
Huge Navigator PEX16 [HugePedia]
snp3D : Map Gene to Disease9409
BioCentury BCIQPEX16
ClinGenPEX16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9409
Chemical/Pharm GKB GenePA33199
Clinical trialPEX16
Miscellaneous
canSAR (ICR)PEX16 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePEX16
EVEXPEX16
GoPubMedPEX16
iHOPPEX16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:21 CET 2017

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