Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PEX19 (peroxisomal biogenesis factor 19)

Identity

Alias_namesPXF
peroxisomal farnesylated protein
Alias_symbol (synonym)HK33
D1S2223E
PMP1
PMPI
PXMP1
Other aliasPBD12A
HGNC (Hugo) PEX19
LocusID (NCBI) 5824
Atlas_Id 71839
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 160276809 and ends at 160285151 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARMC1 (8q13.1) / PEX19 (1q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PEX19   9713
Cards
Entrez_Gene (NCBI)PEX19  5824  peroxisomal biogenesis factor 19
AliasesD1S2223E; HK33; PBD12A; PMP1; 
PMPI; PXF; PXMP1
GeneCards (Weizmann)PEX19
Ensembl hg19 (Hinxton)ENSG00000162735 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162735 [Gene_View]  chr1:160276809-160285151 [Contig_View]  PEX19 [Vega]
ICGC DataPortalENSG00000162735
TCGA cBioPortalPEX19
AceView (NCBI)PEX19
Genatlas (Paris)PEX19
WikiGenes5824
SOURCE (Princeton)PEX19
Genetics Home Reference (NIH)PEX19
Genomic and cartography
GoldenPath hg38 (UCSC)PEX19  -     chr1:160276809-160285151 -  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PEX19  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblPEX19 - 1q23.2 [CytoView hg19]  PEX19 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBIPEX19 [Mapview hg19]  PEX19 [Mapview hg38]
OMIM600279   614886   
Gene and transcription
Genbank (Entrez)AB018541 AB062286 AK300368 AK303099 AY434724
RefSeq transcript (Entrez)NM_001131039 NM_001193644 NM_002857
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PEX19
Cluster EST : UnigeneHs.517232 [ NCBI ]
CGAP (NCI)Hs.517232
Alternative Splicing GalleryENSG00000162735
Gene ExpressionPEX19 [ NCBI-GEO ]   PEX19 [ EBI - ARRAY_EXPRESS ]   PEX19 [ SEEK ]   PEX19 [ MEM ]
Gene Expression Viewer (FireBrowse)PEX19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5824
GTEX Portal (Tissue expression)PEX19
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40855   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40855  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40855
Splice isoforms : SwissVarP40855
PhosPhoSitePlusP40855
Domains : Interpro (EBI)Pex19   
Domain families : Pfam (Sanger)Pex19 (PF04614)   
Domain families : Pfam (NCBI)pfam04614   
Conserved Domain (NCBI)PEX19
DMDM Disease mutations5824
Blocks (Seattle)PEX19
PDB (SRS)2W85    2WL8    3AJB    3MK4   
PDB (PDBSum)2W85    2WL8    3AJB    3MK4   
PDB (IMB)2W85    2WL8    3AJB    3MK4   
PDB (RSDB)2W85    2WL8    3AJB    3MK4   
Structural Biology KnowledgeBase2W85    2WL8    3AJB    3MK4   
SCOP (Structural Classification of Proteins)2W85    2WL8    3AJB    3MK4   
CATH (Classification of proteins structures)2W85    2WL8    3AJB    3MK4   
SuperfamilyP40855
Human Protein AtlasENSG00000162735
Peptide AtlasP40855
HPRD02610
IPIIPI00441867   IPI00939321   IPI00549815   IPI00642757   IPI00985049   IPI00980635   IPI00984773   IPI00922422   
Protein Interaction databases
DIP (DOE-UCLA)P40855
IntAct (EBI)P40855
FunCoupENSG00000162735
BioGRIDPEX19
STRING (EMBL)PEX19
ZODIACPEX19
Ontologies - Pathways
QuickGOP40855
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  cytoplasm  peroxisome  peroxisome  peroxisomal membrane  cytosol  cytosol  protein targeting to peroxisome  protein targeting to peroxisome  peroxisome organization  peroxisome organization  peroxisome fission  brush border membrane  peroxisome membrane class-1 targeting sequence binding  protein complex  protein import into peroxisome membrane  protein N-terminus binding  protein stabilization  ATPase binding  transmembrane transport  chaperone-mediated protein folding  chaperone-mediated protein transport  establishment of protein localization to peroxisome  negative regulation of lipid binding  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  cytoplasm  peroxisome  peroxisome  peroxisomal membrane  cytosol  cytosol  protein targeting to peroxisome  protein targeting to peroxisome  peroxisome organization  peroxisome organization  peroxisome fission  brush border membrane  peroxisome membrane class-1 targeting sequence binding  protein complex  protein import into peroxisome membrane  protein N-terminus binding  protein stabilization  ATPase binding  transmembrane transport  chaperone-mediated protein folding  chaperone-mediated protein transport  establishment of protein localization to peroxisome  negative regulation of lipid binding  
Pathways : KEGGPeroxisome   
NDEx NetworkPEX19
Atlas of Cancer Signalling NetworkPEX19
Wikipedia pathwaysPEX19
Orthology - Evolution
OrthoDB5824
GeneTree (enSembl)ENSG00000162735
Phylogenetic Trees/Animal Genes : TreeFamPEX19
HOVERGENP40855
HOGENOMP40855
Homologs : HomoloGenePEX19
Homology/Alignments : Family Browser (UCSC)PEX19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPEX19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PEX19
dbVarPEX19
ClinVarPEX19
1000_GenomesPEX19 
Exome Variant ServerPEX19
ExAC (Exome Aggregation Consortium)PEX19 (select the gene name)
Genetic variants : HAPMAP5824
Genomic Variants (DGV)PEX19 [DGVbeta]
DECIPHERPEX19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPEX19 
Mutations
ICGC Data PortalPEX19 
TCGA Data PortalPEX19 
Broad Tumor PortalPEX19
OASIS PortalPEX19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPEX19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPEX19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)dbPEX, PEX Gene Database
BioMutasearch PEX19
DgiDB (Drug Gene Interaction Database)PEX19
DoCM (Curated mutations)PEX19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PEX19 (select a term)
intoGenPEX19
Cancer3DPEX19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600279    614886   
Orphanet225    410    5016   
MedgenPEX19
Genetic Testing Registry PEX19
NextProtP40855 [Medical]
TSGene5824
GENETestsPEX19
Target ValidationPEX19
Huge Navigator PEX19 [HugePedia]
snp3D : Map Gene to Disease5824
BioCentury BCIQPEX19
ClinGenPEX19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5824
Chemical/Pharm GKB GenePA34058
Clinical trialPEX19
Miscellaneous
canSAR (ICR)PEX19 (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePEX19
EVEXPEX19
GoPubMedPEX19
iHOPPEX19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:05 CEST 2017

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