Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PEX26 (peroxisomal biogenesis factor 26)

Identity

Alias_namesperoxisome biogenesis factor 26
Alias_symbol (synonym)FLJ20695
Other aliasPBD7A
PBD7B
PEX26M1T
Pex26pM1T
HGNC (Hugo) PEX26
LocusID (NCBI) 55670
Atlas_Id 71841
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 18077994 and ends at 18091031 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PEX26 (22q11.21) / TSHZ2 (20q13.2)PEX26 (22q11.21) / ZNF607 (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PEX26   22965
Cards
Entrez_Gene (NCBI)PEX26  55670  peroxisomal biogenesis factor 26
AliasesPBD7A; PBD7B; PEX26M1T; Pex26pM1T
GeneCards (Weizmann)PEX26
Ensembl hg19 (Hinxton)ENSG00000215193 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215193 [Gene_View]  chr22:18077994-18091031 [Contig_View]  PEX26 [Vega]
ICGC DataPortalENSG00000215193
TCGA cBioPortalPEX26
AceView (NCBI)PEX26
Genatlas (Paris)PEX26
WikiGenes55670
SOURCE (Princeton)PEX26
Genetics Home Reference (NIH)PEX26
Genomic and cartography
GoldenPath hg38 (UCSC)PEX26  -     chr22:18077994-18091031 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PEX26  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblPEX26 - 22q11.21 [CytoView hg19]  PEX26 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIPEX26 [Mapview hg19]  PEX26 [Mapview hg38]
OMIM608666   614872   614873   
Gene and transcription
Genbank (Entrez)AB089678 AB103104 AB103105 AB103106 AB103107
RefSeq transcript (Entrez)NM_001127649 NM_001199319 NM_017929
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PEX26
Cluster EST : UnigeneHs.517400 [ NCBI ]
CGAP (NCI)Hs.517400
Alternative Splicing GalleryENSG00000215193
Gene ExpressionPEX26 [ NCBI-GEO ]   PEX26 [ EBI - ARRAY_EXPRESS ]   PEX26 [ SEEK ]   PEX26 [ MEM ]
Gene Expression Viewer (FireBrowse)PEX26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55670
GTEX Portal (Tissue expression)PEX26
Human Protein AtlasENSG00000215193-PEX26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z412   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z412  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z412
Splice isoforms : SwissVarQ7Z412
PhosPhoSitePlusQ7Z412
Domains : Interpro (EBI)Pex26   
Domain families : Pfam (Sanger)Pex26 (PF07163)   
Domain families : Pfam (NCBI)pfam07163   
Conserved Domain (NCBI)PEX26
DMDM Disease mutations55670
Blocks (Seattle)PEX26
SuperfamilyQ7Z412
Human Protein Atlas [tissue]ENSG00000215193-PEX26 [tissue]
Peptide AtlasQ7Z412
HPRD10559
IPIIPI00743964   IPI00719426   IPI00719261   IPI00384858   IPI00853136   IPI00976128   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z412
IntAct (EBI)Q7Z412
FunCoupENSG00000215193
BioGRIDPEX26
STRING (EMBL)PEX26
ZODIACPEX26
Ontologies - Pathways
QuickGOQ7Z412
Ontology : AmiGOprotein binding  peroxisome  integral component of peroxisomal membrane  protein C-terminus binding  protein import into peroxisome matrix  protein import into peroxisome matrix  protein complex binding  protein import into peroxisome membrane  ATPase binding  
Ontology : EGO-EBIprotein binding  peroxisome  integral component of peroxisomal membrane  protein C-terminus binding  protein import into peroxisome matrix  protein import into peroxisome matrix  protein complex binding  protein import into peroxisome membrane  ATPase binding  
Pathways : KEGGPeroxisome   
NDEx NetworkPEX26
Atlas of Cancer Signalling NetworkPEX26
Wikipedia pathwaysPEX26
Orthology - Evolution
OrthoDB55670
GeneTree (enSembl)ENSG00000215193
Phylogenetic Trees/Animal Genes : TreeFamPEX26
HOVERGENQ7Z412
HOGENOMQ7Z412
Homologs : HomoloGenePEX26
Homology/Alignments : Family Browser (UCSC)PEX26
Gene fusions - Rearrangements
Tumor Fusion PortalPEX26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPEX26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PEX26
dbVarPEX26
ClinVarPEX26
1000_GenomesPEX26 
Exome Variant ServerPEX26
ExAC (Exome Aggregation Consortium)ENSG00000215193
GNOMAD BrowserENSG00000215193
Genetic variants : HAPMAP55670
Genomic Variants (DGV)PEX26 [DGVbeta]
DECIPHERPEX26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPEX26 
Mutations
ICGC Data PortalPEX26 
TCGA Data PortalPEX26 
Broad Tumor PortalPEX26
OASIS PortalPEX26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPEX26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPEX26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)dbPEX, PEX Gene Database
BioMutasearch PEX26
DgiDB (Drug Gene Interaction Database)PEX26
DoCM (Curated mutations)PEX26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PEX26 (select a term)
intoGenPEX26
Cancer3DPEX26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608666    614872    614873   
Orphanet225    410    5016   
DisGeNETPEX26
MedgenPEX26
Genetic Testing Registry PEX26
NextProtQ7Z412 [Medical]
TSGene55670
GENETestsPEX26
Target ValidationPEX26
Huge Navigator PEX26 [HugePedia]
snp3D : Map Gene to Disease55670
BioCentury BCIQPEX26
ClinGenPEX26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55670
Chemical/Pharm GKB GenePA134983458
Clinical trialPEX26
Miscellaneous
canSAR (ICR)PEX26 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePEX26
EVEXPEX26
GoPubMedPEX26
iHOPPEX26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:44:08 CET 2017

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