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PEX3 (peroxisomal biogenesis factor 3)

Identity

Other aliasPBD10A
PBD10B
TRG18
HGNC (Hugo) PEX3
LocusID (NCBI) 8504
Atlas_Id 71842
Location 6q24.2  [Link to chromosome band 6q24]
Location_base_pair Starts at 143450781 and ends at 143490614 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PEX3   8858
Cards
Entrez_Gene (NCBI)PEX3  8504  peroxisomal biogenesis factor 3
AliasesPBD10A; PBD10B; TRG18
GeneCards (Weizmann)PEX3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:143450781-143490614 [Contig_View]  PEX3 [Vega]
TCGA cBioPortalPEX3
AceView (NCBI)PEX3
Genatlas (Paris)PEX3
WikiGenes8504
SOURCE (Princeton)PEX3
Genetics Home Reference (NIH)PEX3
Genomic and cartography
GoldenPath hg38 (UCSC)PEX3  -     chr6:143450781-143490614 +  6q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PEX3  -     6q24.2   [Description]    (hg19-Feb_2009)
EnsemblPEX3 - 6q24.2 [CytoView hg19]  PEX3 - 6q24.2 [CytoView hg38]
Mapping of homologs : NCBIPEX3 [Mapview hg19]  PEX3 [Mapview hg38]
OMIM603164   614882   617370   
Gene and transcription
Genbank (Entrez)AB035307 AJ001625 AJ131389 AK023593 AK025644
RefSeq transcript (Entrez)NM_003630
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PEX3
Cluster EST : UnigeneHs.592832 [ NCBI ]
CGAP (NCI)Hs.592832
Gene ExpressionPEX3 [ NCBI-GEO ]   PEX3 [ EBI - ARRAY_EXPRESS ]   PEX3 [ SEEK ]   PEX3 [ MEM ]
Gene Expression Viewer (FireBrowse)PEX3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8504
GTEX Portal (Tissue expression)PEX3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56589   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56589  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56589
Splice isoforms : SwissVarP56589
PhosPhoSitePlusP56589
Domains : Interpro (EBI)Peroxin-3   
Domain families : Pfam (Sanger)Peroxin-3 (PF04882)   
Domain families : Pfam (NCBI)pfam04882   
Conserved Domain (NCBI)PEX3
DMDM Disease mutations8504
Blocks (Seattle)PEX3
PDB (SRS)3AJB    3MK4   
PDB (PDBSum)3AJB    3MK4   
PDB (IMB)3AJB    3MK4   
PDB (RSDB)3AJB    3MK4   
Structural Biology KnowledgeBase3AJB    3MK4   
SCOP (Structural Classification of Proteins)3AJB    3MK4   
CATH (Classification of proteins structures)3AJB    3MK4   
SuperfamilyP56589
Peptide AtlasP56589
HPRD04407
IPIIPI00010232   IPI00385462   
Protein Interaction databases
DIP (DOE-UCLA)P56589
IntAct (EBI)P56589
BioGRIDPEX3
STRING (EMBL)PEX3
ZODIACPEX3
Ontologies - Pathways
QuickGOP56589
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                    
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                    
NDEx NetworkPEX3
Atlas of Cancer Signalling NetworkPEX3
Wikipedia pathwaysPEX3
Orthology - Evolution
OrthoDB8504
Phylogenetic Trees/Animal Genes : TreeFamPEX3
HOVERGENP56589
HOGENOMP56589
Homologs : HomoloGenePEX3
Homology/Alignments : Family Browser (UCSC)PEX3
Gene fusions - Rearrangements
Fusion : QuiverPEX3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPEX3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PEX3
dbVarPEX3
ClinVarPEX3
1000_GenomesPEX3 
Exome Variant ServerPEX3
Varsome BrowserPEX3
Genetic variants : HAPMAP8504
Genomic Variants (DGV)PEX3 [DGVbeta]
DECIPHERPEX3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPEX3 
Mutations
ICGC Data PortalPEX3 
TCGA Data PortalPEX3 
Broad Tumor PortalPEX3
OASIS PortalPEX3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPEX3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPEX3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)dbPEX, PEX Gene Database
BioMutasearch PEX3
DgiDB (Drug Gene Interaction Database)PEX3
DoCM (Curated mutations)PEX3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PEX3 (select a term)
intoGenPEX3
Cancer3DPEX3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603164    614882    617370   
Orphanet225    410    5016   
DisGeNETPEX3
MedgenPEX3
Genetic Testing Registry PEX3
NextProtP56589 [Medical]
TSGene8504
GENETestsPEX3
Target ValidationPEX3
Huge Navigator PEX3 [HugePedia]
snp3D : Map Gene to Disease8504
BioCentury BCIQPEX3
ClinGenPEX3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8504
Chemical/Pharm GKB GenePA33200
Clinical trialPEX3
Miscellaneous
canSAR (ICR)PEX3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePEX3
EVEXPEX3
GoPubMedPEX3
iHOPPEX3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:23:38 CEST 2018

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