Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PEX5L (peroxisomal biogenesis factor 5 like)

Identity

Alias (NCBI)PEX5R
PEX5RP
PXR2
PXR2B
TRIP8b
HGNC (Hugo) PEX5L
HGNC Alias symbPEX5R
PXR2
TRIP8b
HGNC Alias nameHCN channel auxiliary subunit
LocusID (NCBI) 51555
Atlas_Id 71843
Location 3q26.33  [Link to chromosome band 3q26]
Location_base_pair Starts at 179794959 and ends at 180036937 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HLA-DRA (6p21.32) / PEX5L (3q26.33)NAALADL2 (3q26.31) / PEX5L (3q26.33)PTRH2 (17q23.1) / PEX5L (3q26.33)
SLC25A36 (3q23) / PEX5L (3q26.33)TMEM68 (8q12.1) / PEX5L (3q26.33)NAALADL2 PEX5L
PTRH2 PEX5LSLC25A36 PEX5L

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PEX5L   30024
Cards
Entrez_Gene (NCBI)PEX5L    peroxisomal biogenesis factor 5 like
AliasesPEX5R; PEX5RP; PXR2; PXR2B; 
TRIP8b
GeneCards (Weizmann)PEX5L
Ensembl hg19 (Hinxton)ENSG00000114757 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114757 [Gene_View]  ENSG00000114757 [Sequence]  chr3:179794959-180036937 [Contig_View]  PEX5L [Vega]
ICGC DataPortalENSG00000114757
TCGA cBioPortalPEX5L
AceView (NCBI)PEX5L
Genatlas (Paris)PEX5L
SOURCE (Princeton)PEX5L
Genetics Home Reference (NIH)PEX5L
Genomic and cartography
GoldenPath hg38 (UCSC)PEX5L  -     chr3:179794959-180036937 -  3q26.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PEX5L  -     3q26.33   [Description]    (hg19-Feb_2009)
GoldenPathPEX5L - 3q26.33 [CytoView hg19]  PEX5L - 3q26.33 [CytoView hg38]
ImmunoBaseENSG00000114757
Genome Data Viewer NCBIPEX5L [Mapview hg19]  
OMIM611058   
Gene and transcription
Genbank (Entrez)AB032592 AB032593 AF088015 AJ245503 AK294227
RefSeq transcript (Entrez)NM_001256750 NM_001256751 NM_001256752 NM_001256753 NM_001256754 NM_001256755 NM_001256756 NM_001349386 NM_001349387 NM_001349388 NM_001349389 NM_001349390 NM_001349391 NM_001349392 NM_001349393 NM_001349394 NM_001349395 NM_001349396 NM_001349397 NM_001349398 NM_001349399 NM_001349401 NM_001349404 NM_001349406 NM_001349408 NM_001349409 NM_001349410 NM_016559
Consensus coding sequences : CCDS (NCBI)PEX5L
Gene ExpressionPEX5L [ NCBI-GEO ]   PEX5L [ EBI - ARRAY_EXPRESS ]   PEX5L [ SEEK ]   PEX5L [ MEM ]
Gene Expression Viewer (FireBrowse)PEX5L [ Firebrowse - Broad ]
GenevisibleExpression of PEX5L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51555
GTEX Portal (Tissue expression)PEX5L
Human Protein AtlasENSG00000114757-PEX5L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PEX5L
Human Protein Atlas [tissue]ENSG00000114757-PEX5L [tissue]
HPRD11425
Protein Interaction databases
BioGRIDPEX5L
STRING (EMBL)PEX5L
ZODIACPEX5L
Ontologies - Pathways
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPEX5L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:15:56 CEST 2021

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