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PFDN1 (prefoldin subunit 1)

Identity

Alias_namesprefoldin 1
Alias_symbol (synonym)PFD1
Other aliasPDF
HGNC (Hugo) PFDN1
LocusID (NCBI) 5201
Atlas_Id 55901
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 139624635 and ends at 139682689 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PFDN1   8866
Cards
Entrez_Gene (NCBI)PFDN1  5201  prefoldin subunit 1
AliasesPDF; PFD1
GeneCards (Weizmann)PFDN1
Ensembl hg19 (Hinxton)ENSG00000113068 [Gene_View]  chr5:139624635-139682689 [Contig_View]  PFDN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000113068 [Gene_View]  chr5:139624635-139682689 [Contig_View]  PFDN1 [Vega]
ICGC DataPortalENSG00000113068
TCGA cBioPortalPFDN1
AceView (NCBI)PFDN1
Genatlas (Paris)PFDN1
WikiGenes5201
SOURCE (Princeton)PFDN1
Genetics Home Reference (NIH)PFDN1
Genomic and cartography
GoldenPath hg19 (UCSC)PFDN1  -     chr5:139624635-139682689 -  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PFDN1  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPFDN1 - 5q31.3 [CytoView hg19]  PFDN1 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPFDN1 [Mapview hg19]  PFDN1 [Mapview hg38]
OMIM604897   
Gene and transcription
Genbank (Entrez)AA910992 AK093558 AK223394 AK315353 BC003620
RefSeq transcript (Entrez)NM_002622
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PFDN1
Cluster EST : UnigeneHs.483564 [ NCBI ]
CGAP (NCI)Hs.483564
Alternative Splicing GalleryENSG00000113068
Gene ExpressionPFDN1 [ NCBI-GEO ]   PFDN1 [ EBI - ARRAY_EXPRESS ]   PFDN1 [ SEEK ]   PFDN1 [ MEM ]
Gene Expression Viewer (FireBrowse)PFDN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5201
GTEX Portal (Tissue expression)PFDN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60925   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60925  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60925
Splice isoforms : SwissVarO60925
PhosPhoSitePlusO60925
Domains : Interpro (EBI)PFD_beta-like    Prefoldin   
Domain families : Pfam (Sanger)Prefoldin_2 (PF01920)   
Domain families : Pfam (NCBI)pfam01920   
Conserved Domain (NCBI)PFDN1
DMDM Disease mutations5201
Blocks (Seattle)PFDN1
SuperfamilyO60925
Human Protein AtlasENSG00000113068
Peptide AtlasO60925
HPRD05357
IPIIPI00000051   IPI00966069   IPI00974249   
Protein Interaction databases
DIP (DOE-UCLA)O60925
IntAct (EBI)O60925
FunCoupENSG00000113068
BioGRIDPFDN1
STRING (EMBL)PFDN1
ZODIACPFDN1
Ontologies - Pathways
QuickGOO60925
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  regulation of transcription, DNA-templated  protein folding  cell cycle  prefoldin complex  protein binding involved in protein folding  unfolded protein binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  regulation of transcription, DNA-templated  protein folding  cell cycle  prefoldin complex  protein binding involved in protein folding  unfolded protein binding  
NDEx NetworkPFDN1
Atlas of Cancer Signalling NetworkPFDN1
Wikipedia pathwaysPFDN1
Orthology - Evolution
OrthoDB5201
GeneTree (enSembl)ENSG00000113068
Phylogenetic Trees/Animal Genes : TreeFamPFDN1
HOVERGENO60925
HOGENOMO60925
Homologs : HomoloGenePFDN1
Homology/Alignments : Family Browser (UCSC)PFDN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPFDN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PFDN1
dbVarPFDN1
ClinVarPFDN1
1000_GenomesPFDN1 
Exome Variant ServerPFDN1
ExAC (Exome Aggregation Consortium)PFDN1 (select the gene name)
Genetic variants : HAPMAP5201
Genomic Variants (DGV)PFDN1 [DGVbeta]
DECIPHER (Syndromes)5:139624635-139682689  ENSG00000113068
CONAN: Copy Number AnalysisPFDN1 
Mutations
ICGC Data PortalPFDN1 
TCGA Data PortalPFDN1 
Broad Tumor PortalPFDN1
OASIS PortalPFDN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPFDN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPFDN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PFDN1
DgiDB (Drug Gene Interaction Database)PFDN1
DoCM (Curated mutations)PFDN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PFDN1 (select a term)
intoGenPFDN1
Cancer3DPFDN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604897   
Orphanet
MedgenPFDN1
Genetic Testing Registry PFDN1
NextProtO60925 [Medical]
TSGene5201
GENETestsPFDN1
Huge Navigator PFDN1 [HugePedia]
snp3D : Map Gene to Disease5201
BioCentury BCIQPFDN1
ClinGenPFDN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5201
Chemical/Pharm GKB GenePA33207
Clinical trialPFDN1
Miscellaneous
canSAR (ICR)PFDN1 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePFDN1
EVEXPFDN1
GoPubMedPFDN1
iHOPPFDN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:04 CEST 2017

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