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PFDN2 (prefoldin subunit 2)

Identity

Alias_namesprefoldin 2
Other aliasPFD2
HGNC (Hugo) PFDN2
LocusID (NCBI) 5202
Atlas_Id 53783
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 161100556 and ends at 161118076 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASIC2 (17q11.2) / PFDN2 (1q23.3)PFDN2 (1q23.3) / RAB7A (3q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PFDN2   8867
Cards
Entrez_Gene (NCBI)PFDN2  5202  prefoldin subunit 2
AliasesPFD2
GeneCards (Weizmann)PFDN2
Ensembl hg19 (Hinxton)ENSG00000143256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143256 [Gene_View]  chr1:161100556-161118076 [Contig_View]  PFDN2 [Vega]
ICGC DataPortalENSG00000143256
TCGA cBioPortalPFDN2
AceView (NCBI)PFDN2
Genatlas (Paris)PFDN2
WikiGenes5202
SOURCE (Princeton)PFDN2
Genetics Home Reference (NIH)PFDN2
Genomic and cartography
GoldenPath hg38 (UCSC)PFDN2  -     chr1:161100556-161118076 -  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PFDN2  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblPFDN2 - 1q23.3 [CytoView hg19]  PFDN2 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIPFDN2 [Mapview hg19]  PFDN2 [Mapview hg38]
OMIM613466   
Gene and transcription
Genbank (Entrez)AF117237 AF151065 AF165883 AK024531 AK315736
RefSeq transcript (Entrez)NM_012394
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PFDN2
Cluster EST : UnigeneHs.492516 [ NCBI ]
CGAP (NCI)Hs.492516
Alternative Splicing GalleryENSG00000143256
Gene ExpressionPFDN2 [ NCBI-GEO ]   PFDN2 [ EBI - ARRAY_EXPRESS ]   PFDN2 [ SEEK ]   PFDN2 [ MEM ]
Gene Expression Viewer (FireBrowse)PFDN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5202
GTEX Portal (Tissue expression)PFDN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHV9
Splice isoforms : SwissVarQ9UHV9
PhosPhoSitePlusQ9UHV9
Domains : Interpro (EBI)PFD2    PFD_beta-like    Prefoldin   
Domain families : Pfam (Sanger)Prefoldin_2 (PF01920)   
Domain families : Pfam (NCBI)pfam01920   
Conserved Domain (NCBI)PFDN2
DMDM Disease mutations5202
Blocks (Seattle)PFDN2
SuperfamilyQ9UHV9
Human Protein AtlasENSG00000143256
Peptide AtlasQ9UHV9
HPRD09658
IPIIPI00006052   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHV9
IntAct (EBI)Q9UHV9
FunCoupENSG00000143256
BioGRIDPFDN2
STRING (EMBL)PFDN2
ZODIACPFDN2
Ontologies - Pathways
QuickGOQ9UHV9
Ontology : AmiGOprotein binding  nucleus  cytoplasm  mitochondrion  cytosol  protein folding  prefoldin complex  protein binding involved in protein folding  unfolded protein binding  positive regulation of cytoskeleton organization  extracellular exosome  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  mitochondrion  cytosol  protein folding  prefoldin complex  protein binding involved in protein folding  unfolded protein binding  positive regulation of cytoskeleton organization  extracellular exosome  
NDEx NetworkPFDN2
Atlas of Cancer Signalling NetworkPFDN2
Wikipedia pathwaysPFDN2
Orthology - Evolution
OrthoDB5202
GeneTree (enSembl)ENSG00000143256
Phylogenetic Trees/Animal Genes : TreeFamPFDN2
HOVERGENQ9UHV9
HOGENOMQ9UHV9
Homologs : HomoloGenePFDN2
Homology/Alignments : Family Browser (UCSC)PFDN2
Gene fusions - Rearrangements
Fusion : MitelmanASIC2/PFDN2 [17q11.2/1q23.3]  [t(1;17)(q23;q12)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPFDN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PFDN2
dbVarPFDN2
ClinVarPFDN2
1000_GenomesPFDN2 
Exome Variant ServerPFDN2
ExAC (Exome Aggregation Consortium)PFDN2 (select the gene name)
Genetic variants : HAPMAP5202
Genomic Variants (DGV)PFDN2 [DGVbeta]
DECIPHERPFDN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPFDN2 
Mutations
ICGC Data PortalPFDN2 
TCGA Data PortalPFDN2 
Broad Tumor PortalPFDN2
OASIS PortalPFDN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPFDN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPFDN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PFDN2
DgiDB (Drug Gene Interaction Database)PFDN2
DoCM (Curated mutations)PFDN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PFDN2 (select a term)
intoGenPFDN2
Cancer3DPFDN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613466   
Orphanet
MedgenPFDN2
Genetic Testing Registry PFDN2
NextProtQ9UHV9 [Medical]
TSGene5202
GENETestsPFDN2
Target ValidationPFDN2
Huge Navigator PFDN2 [HugePedia]
snp3D : Map Gene to Disease5202
BioCentury BCIQPFDN2
ClinGenPFDN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5202
Chemical/Pharm GKB GenePA33208
Clinical trialPFDN2
Miscellaneous
canSAR (ICR)PFDN2 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePFDN2
EVEXPFDN2
GoPubMedPFDN2
iHOPPFDN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:49:08 CEST 2017

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