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PFDN4 (prefoldin subunit 4)

Identity

Alias (NCBI)C1
PFD4
HGNC (Hugo) PFDN4
HGNC Alias symbPFD4
C-1
C1
HGNC Previous nameprefoldin 4
LocusID (NCBI) 5203
Atlas_Id 52148
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 54208087 and ends at 54219961 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PFDN4 (20q13.2) / PFDN4 (20q13.2)SNAI1 (20q13.13) / PFDN4 (20q13.2)SNAI1 20q13.13 / PFDN4 20q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PFDN4   8868
Cards
Entrez_Gene (NCBI)PFDN4    prefoldin subunit 4
AliasesC1; PFD4
GeneCards (Weizmann)PFDN4
Ensembl hg19 (Hinxton)ENSG00000101132 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101132 [Gene_View]  ENSG00000101132 [Sequence]  chr20:54208087-54219961 [Contig_View]  PFDN4 [Vega]
ICGC DataPortalENSG00000101132
TCGA cBioPortalPFDN4
AceView (NCBI)PFDN4
Genatlas (Paris)PFDN4
SOURCE (Princeton)PFDN4
Genetics Home Reference (NIH)PFDN4
Genomic and cartography
GoldenPath hg38 (UCSC)PFDN4  -     chr20:54208087-54219961 +  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PFDN4  -     20q13.2   [Description]    (hg19-Feb_2009)
GoldenPathPFDN4 - 20q13.2 [CytoView hg19]  PFDN4 - 20q13.2 [CytoView hg38]
ImmunoBaseENSG00000101132
Genome Data Viewer NCBIPFDN4 [Mapview hg19]  
OMIM604898   
Gene and transcription
Genbank (Entrez)AK312059 BC010953 CN482830 U41816
RefSeq transcript (Entrez)NM_002623
Consensus coding sequences : CCDS (NCBI)PFDN4
Gene ExpressionPFDN4 [ NCBI-GEO ]   PFDN4 [ EBI - ARRAY_EXPRESS ]   PFDN4 [ SEEK ]   PFDN4 [ MEM ]
Gene Expression Viewer (FireBrowse)PFDN4 [ Firebrowse - Broad ]
GenevisibleExpression of PFDN4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5203
GTEX Portal (Tissue expression)PFDN4
Human Protein AtlasENSG00000101132-PFDN4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQP4
PhosPhoSitePlusQ9NQP4
Domains : Interpro (EBI)PFD_beta-like    PFDN4    Prefoldin   
Domain families : Pfam (Sanger)Prefoldin_2 (PF01920)   
Domain families : Pfam (NCBI)pfam01920   
Conserved Domain (NCBI)PFDN4
PDB (RSDB)6NR8    6NR9    6NRB    6NRC    6NRD   
PDB Europe6NR8    6NR9    6NRB    6NRC    6NRD   
PDB (PDBSum)6NR8    6NR9    6NRB    6NRC    6NRD   
PDB (IMB)6NR8    6NR9    6NRB    6NRC    6NRD   
Structural Biology KnowledgeBase6NR8    6NR9    6NRB    6NRC    6NRD   
SCOP (Structural Classification of Proteins)6NR8    6NR9    6NRB    6NRC    6NRD   
CATH (Classification of proteins structures)6NR8    6NR9    6NRB    6NRC    6NRD   
SuperfamilyQ9NQP4
AlphaFold pdb e-kbQ9NQP4   
Human Protein Atlas [tissue]ENSG00000101132-PFDN4 [tissue]
HPRD05358
Protein Interaction databases
DIP (DOE-UCLA)Q9NQP4
IntAct (EBI)Q9NQP4
BioGRIDPFDN4
STRING (EMBL)PFDN4
ZODIACPFDN4
Ontologies - Pathways
QuickGOQ9NQP4
Ontology : AmiGOamyloid-beta binding  protein binding  nucleus  cytoplasm  cytoplasm  mitochondrion  cytosol  protein folding  protein folding  prefoldin complex  prefoldin complex  unfolded protein binding  chaperone binding  negative regulation of amyloid fibril formation  
Ontology : EGO-EBIamyloid-beta binding  protein binding  nucleus  cytoplasm  cytoplasm  mitochondrion  cytosol  protein folding  protein folding  prefoldin complex  prefoldin complex  unfolded protein binding  chaperone binding  negative regulation of amyloid fibril formation  
NDEx NetworkPFDN4
Atlas of Cancer Signalling NetworkPFDN4
Wikipedia pathwaysPFDN4
Orthology - Evolution
OrthoDB5203
GeneTree (enSembl)ENSG00000101132
Phylogenetic Trees/Animal Genes : TreeFamPFDN4
Homologs : HomoloGenePFDN4
Homology/Alignments : Family Browser (UCSC)PFDN4
Gene fusions - Rearrangements
Fusion : MitelmanSNAI1/PFDN4 [20q13.13/20q13.2]  
Fusion : QuiverPFDN4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPFDN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PFDN4
dbVarPFDN4
ClinVarPFDN4
MonarchPFDN4
1000_GenomesPFDN4 
Exome Variant ServerPFDN4
GNOMAD BrowserENSG00000101132
Varsome BrowserPFDN4
ACMGPFDN4 variants
VarityQ9NQP4
Genomic Variants (DGV)PFDN4 [DGVbeta]
DECIPHERPFDN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPFDN4 
Mutations
ICGC Data PortalPFDN4 
TCGA Data PortalPFDN4 
Broad Tumor PortalPFDN4
OASIS PortalPFDN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPFDN4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPFDN4
Mutations and Diseases : HGMDPFDN4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPFDN4
DgiDB (Drug Gene Interaction Database)PFDN4
DoCM (Curated mutations)PFDN4
CIViC (Clinical Interpretations of Variants in Cancer)PFDN4
Cancer3DPFDN4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604898   
Orphanet
DisGeNETPFDN4
MedgenPFDN4
Genetic Testing Registry PFDN4
NextProtQ9NQP4 [Medical]
GENETestsPFDN4
Target ValidationPFDN4
Huge Navigator PFDN4 [HugePedia]
ClinGenPFDN4
Clinical trials, drugs, therapy
MyCancerGenomePFDN4
Protein Interactions : CTDPFDN4
Pharm GKB GenePA33209
PharosQ9NQP4
Clinical trialPFDN4
Miscellaneous
canSAR (ICR)PFDN4
HarmonizomePFDN4
DataMed IndexPFDN4
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPFDN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:24:58 CEST 2021

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