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PFDN4 (prefoldin subunit 4)

Identity

Alias_namesprefoldin 4
Alias_symbol (synonym)PFD4
C-1
C1
Other alias
HGNC (Hugo) PFDN4
LocusID (NCBI) 5203
Atlas_Id 52148
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 54207963 and ends at 54219953 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PFDN4 (20q13.2) / PFDN4 (20q13.2)SNAI1 (20q13.13) / PFDN4 (20q13.2)SNAI1 20q13.13 / PFDN4 20q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PFDN4   8868
Cards
Entrez_Gene (NCBI)PFDN4  5203  prefoldin subunit 4
AliasesC1; PFD4
GeneCards (Weizmann)PFDN4
Ensembl hg19 (Hinxton)ENSG00000101132 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101132 [Gene_View]  chr20:54207963-54219953 [Contig_View]  PFDN4 [Vega]
ICGC DataPortalENSG00000101132
TCGA cBioPortalPFDN4
AceView (NCBI)PFDN4
Genatlas (Paris)PFDN4
WikiGenes5203
SOURCE (Princeton)PFDN4
Genetics Home Reference (NIH)PFDN4
Genomic and cartography
GoldenPath hg38 (UCSC)PFDN4  -     chr20:54207963-54219953 +  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PFDN4  -     20q13.2   [Description]    (hg19-Feb_2009)
EnsemblPFDN4 - 20q13.2 [CytoView hg19]  PFDN4 - 20q13.2 [CytoView hg38]
Mapping of homologs : NCBIPFDN4 [Mapview hg19]  PFDN4 [Mapview hg38]
OMIM604898   
Gene and transcription
Genbank (Entrez)AK312059 BC010953 CN482830 U41816
RefSeq transcript (Entrez)NM_002623
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PFDN4
Cluster EST : UnigeneHs.91161 [ NCBI ]
CGAP (NCI)Hs.91161
Alternative Splicing GalleryENSG00000101132
Gene ExpressionPFDN4 [ NCBI-GEO ]   PFDN4 [ EBI - ARRAY_EXPRESS ]   PFDN4 [ SEEK ]   PFDN4 [ MEM ]
Gene Expression Viewer (FireBrowse)PFDN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5203
GTEX Portal (Tissue expression)PFDN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQP4
Splice isoforms : SwissVarQ9NQP4
PhosPhoSitePlusQ9NQP4
Domains : Interpro (EBI)PFD_beta-like    PFDN4    Prefoldin   
Domain families : Pfam (Sanger)Prefoldin_2 (PF01920)   
Domain families : Pfam (NCBI)pfam01920   
Conserved Domain (NCBI)PFDN4
DMDM Disease mutations5203
Blocks (Seattle)PFDN4
SuperfamilyQ9NQP4
Human Protein AtlasENSG00000101132
Peptide AtlasQ9NQP4
HPRD05358
IPIIPI00015891   IPI00980273   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQP4
IntAct (EBI)Q9NQP4
FunCoupENSG00000101132
BioGRIDPFDN4
STRING (EMBL)PFDN4
ZODIACPFDN4
Ontologies - Pathways
QuickGOQ9NQP4
Ontology : AmiGOprotein binding  nucleus  cytoplasm  mitochondrion  cytosol  protein folding  prefoldin complex  unfolded protein binding  chaperone binding  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  mitochondrion  cytosol  protein folding  prefoldin complex  unfolded protein binding  chaperone binding  
NDEx NetworkPFDN4
Atlas of Cancer Signalling NetworkPFDN4
Wikipedia pathwaysPFDN4
Orthology - Evolution
OrthoDB5203
GeneTree (enSembl)ENSG00000101132
Phylogenetic Trees/Animal Genes : TreeFamPFDN4
HOVERGENQ9NQP4
HOGENOMQ9NQP4
Homologs : HomoloGenePFDN4
Homology/Alignments : Family Browser (UCSC)PFDN4
Gene fusions - Rearrangements
Fusion : MitelmanSNAI1/PFDN4 [20q13.13/20q13.2]  [t(20;20)(q13;q13)]  
Fusion: TCGASNAI1 20q13.13 PFDN4 20q13.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPFDN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PFDN4
dbVarPFDN4
ClinVarPFDN4
1000_GenomesPFDN4 
Exome Variant ServerPFDN4
ExAC (Exome Aggregation Consortium)PFDN4 (select the gene name)
Genetic variants : HAPMAP5203
Genomic Variants (DGV)PFDN4 [DGVbeta]
DECIPHERPFDN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPFDN4 
Mutations
ICGC Data PortalPFDN4 
TCGA Data PortalPFDN4 
Broad Tumor PortalPFDN4
OASIS PortalPFDN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPFDN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPFDN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PFDN4
DgiDB (Drug Gene Interaction Database)PFDN4
DoCM (Curated mutations)PFDN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PFDN4 (select a term)
intoGenPFDN4
Cancer3DPFDN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604898   
Orphanet
MedgenPFDN4
Genetic Testing Registry PFDN4
NextProtQ9NQP4 [Medical]
TSGene5203
GENETestsPFDN4
Target ValidationPFDN4
Huge Navigator PFDN4 [HugePedia]
snp3D : Map Gene to Disease5203
BioCentury BCIQPFDN4
ClinGenPFDN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5203
Chemical/Pharm GKB GenePA33209
Clinical trialPFDN4
Miscellaneous
canSAR (ICR)PFDN4 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePFDN4
EVEXPFDN4
GoPubMedPFDN4
iHOPPFDN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:49:09 CEST 2017

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