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PGA5 (pepsinogen 5, group I (pepsinogen A))

Identity

Other aliasPg5
HGNC (Hugo) PGA5
LocusID (NCBI) 5222
Atlas_Id 56147
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 61008648 and ends at 61018915 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGA5   8887
Cards
Entrez_Gene (NCBI)PGA5  5222  pepsinogen 5, group I (pepsinogen A)
AliasesPg5
GeneCards (Weizmann)PGA5
Ensembl hg19 (Hinxton)ENSG00000256713 [Gene_View]  chr11:61008648-61018915 [Contig_View]  PGA5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000256713 [Gene_View]  chr11:61008648-61018915 [Contig_View]  PGA5 [Vega]
ICGC DataPortalENSG00000256713
TCGA cBioPortalPGA5
AceView (NCBI)PGA5
Genatlas (Paris)PGA5
WikiGenes5222
SOURCE (Princeton)PGA5
Genetics Home Reference (NIH)PGA5
Genomic and cartography
GoldenPath hg19 (UCSC)PGA5  -     chr11:61008648-61018915 +  11q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PGA5  -     11q12.2   [Description]    (hg38-Dec_2013)
EnsemblPGA5 - 11q12.2 [CytoView hg19]  PGA5 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIPGA5 [Mapview hg19]  PGA5 [Mapview hg38]
OMIM169730   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_014224
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGA5
Cluster EST : UnigeneHs.432854 [ NCBI ]
CGAP (NCI)Hs.432854
Alternative Splicing GalleryENSG00000256713
Gene ExpressionPGA5 [ NCBI-GEO ]   PGA5 [ EBI - ARRAY_EXPRESS ]   PGA5 [ SEEK ]   PGA5 [ MEM ]
Gene Expression Viewer (FireBrowse)PGA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5222
GTEX Portal (Tissue expression)PGA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DJD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DJD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DJD9
Splice isoforms : SwissVarP0DJD9
Catalytic activity : Enzyme3.4.23.1 [ Enzyme-Expasy ]   3.4.23.13.4.23.1 [ IntEnz-EBI ]   3.4.23.1 [ BRENDA ]   3.4.23.1 [ KEGG ]   
PhosPhoSitePlusP0DJD9
Domaine pattern : Prosite (Expaxy)ASP_PROTEASE (PS00141)    PEPTIDASE_A1 (PS51767)   
Domains : Interpro (EBI)Aspartic_peptidase_A1    Aspartic_peptidase_AS    Aspartic_peptidase_N    PEPTIDASE_A1    Peptidase_aspartic_dom   
Domain families : Pfam (Sanger)A1_Propeptide (PF07966)    Asp (PF00026)   
Domain families : Pfam (NCBI)pfam07966    pfam00026   
Conserved Domain (NCBI)PGA5
DMDM Disease mutations5222
Blocks (Seattle)PGA5
SuperfamilyP0DJD9
Human Protein AtlasENSG00000256713
Peptide AtlasP0DJD9
HPRD01356
Protein Interaction databases
DIP (DOE-UCLA)P0DJD9
IntAct (EBI)P0DJD9
FunCoupENSG00000256713
BioGRIDPGA5
STRING (EMBL)PGA5
ZODIACPGA5
Ontologies - Pathways
QuickGOP0DJD9
Ontology : AmiGOaspartic-type endopeptidase activity  proteolysis  digestion  peptidase activity  protein catabolic process  cellular protein metabolic process  extracellular exosome  multivesicular body lumen  
Ontology : EGO-EBIaspartic-type endopeptidase activity  proteolysis  digestion  peptidase activity  protein catabolic process  cellular protein metabolic process  extracellular exosome  multivesicular body lumen  
Pathways : KEGGProtein digestion and absorption   
NDEx NetworkPGA5
Atlas of Cancer Signalling NetworkPGA5
Wikipedia pathwaysPGA5
Orthology - Evolution
OrthoDB5222
GeneTree (enSembl)ENSG00000256713
Phylogenetic Trees/Animal Genes : TreeFamPGA5
HOVERGENP0DJD9
HOGENOMP0DJD9
Homologs : HomoloGenePGA5
Homology/Alignments : Family Browser (UCSC)PGA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGA5
dbVarPGA5
ClinVarPGA5
1000_GenomesPGA5 
Exome Variant ServerPGA5
ExAC (Exome Aggregation Consortium)PGA5 (select the gene name)
Genetic variants : HAPMAP5222
Genomic Variants (DGV)PGA5 [DGVbeta]
DECIPHER (Syndromes)11:61008648-61018915  ENSG00000256713
CONAN: Copy Number AnalysisPGA5 
Mutations
ICGC Data PortalPGA5 
TCGA Data PortalPGA5 
Broad Tumor PortalPGA5
OASIS PortalPGA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PGA5
DgiDB (Drug Gene Interaction Database)PGA5
DoCM (Curated mutations)PGA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGA5 (select a term)
intoGenPGA5
Cancer3DPGA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM169730   
Orphanet
MedgenPGA5
Genetic Testing Registry PGA5
NextProtP0DJD9 [Medical]
TSGene5222
GENETestsPGA5
Huge Navigator PGA5 [HugePedia]
snp3D : Map Gene to Disease5222
BioCentury BCIQPGA5
ClinGenPGA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5222
Chemical/Pharm GKB GenePA33224
Clinical trialPGA5
Miscellaneous
canSAR (ICR)PGA5 (select the gene name)
Probes
Litterature
PubMed86 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGA5
EVEXPGA5
GoPubMedPGA5
iHOPPGA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:14:07 CEST 2017

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