Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PGAM2 (phosphoglycerate mutase 2 (muscle))

Identity

Other namesGSD10
PGAM-M
PGAMM
HGNC (Hugo) PGAM2
LocusID (NCBI) 5224
Location 7p13
Location_base_pair Starts at 44102326 and ends at 44105186 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PGAM2   8889
Entrez_Gene (NCBI)PGAM2  5224  phosphoglycerate mutase 2 (muscle)
Cards
GeneCards (Weizmann)PGAM2
Ensembl (Hinxton)ENSG00000164708 [Gene_View]  chr7:44102326-44105186 [Contig_View]  PGAM2 [Vega]
AceView (NCBI)PGAM2
Genatlas (Paris)PGAM2
SOURCE (Stanford)NM_000290
Genomic and cartography
GoldenPath (UCSC)PGAM2  -  7p13   chr7:44102326-44105186 -  7p13   [Description]    (hg19-Feb_2009)
EnsemblPGAM2 - 7p13 [CytoView]
Mapping of homologs : NCBIPGAM2 [Mapview]
OMIM261670   612931   
Gene and transcription
Genbank (Entrez)BC001904 BC073741 CT002473 M18172
RefSeq transcript (SRS)NM_000290
RefSeq transcript (Entrez)NM_000290
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NG_013016 NT_007819 NT_079592 NW_001839004 NW_004078029
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NG_013016 NT_007819 NT_079592 NW_001839004 NW_004078029
Consensus coding sequences : CCDS (NCBI)PGAM2
Cluster EST : UnigeneHs.632642 [ SRS ] Hs.632642 [ NCBI ]
CGAP (NCI)Hs.632642
Alternative Splicing : Fast-db (Paris)GSHG0028156
Alternative Splicing GalleryENSG00000164708
Gene ExpressionPGAM2 [ NCBI-GEO ]   PGAM2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15259 (SRS) P15259 (Uniprot)
NextProtP15259
With graphics : InterProP15259
Splice isoforms : SwissVarP15259(Swissvar)
Domaine pattern : Prosite (SRS)PG_MUTASE (PS00175)   
Domaine pattern : Prosite (Expaxy)PG_MUTASE (PS00175)   
Domains : Interpro (SRS)His_Pase_superF_clade-1    PG/BPGM_mutase_AS    Phosphogly_mut1   
Domains : Interpro (EBI)His_Pase_superF_clade-1    PG/BPGM_mutase_AS    Phosphogly_mut1   
Related proteins : CluSTrP15259
Domain families : Pfam (SRS)His_Phos_1 (PF00300)   
Domain families : Pfam (Sanger)His_Phos_1 (PF00300)   
Domain families : Pfam (NCBI)pfam00300   
Domain families : Smart (EMBL)PGAM (SM00855)  
DMDM5224
Blocks (Seattle)P15259
Human Protein AtlasENSG00000164708
HPRD02027
IPIIPI00218570   IPI00844133   
Protein Interaction databases
DIP (DOE-UCLA)P15259
IntAct (EBI)P15259
FunCoupENSG00000164708
REACTOMEPGAM2
Protein Interaction Database5224
BioGRIDPGAM2
InParanoidP15259
Interologous Interaction database P15259
IntegromeDBPGAM2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PGAM2
SNP (GeneSNP Utah)PGAM2
SNP : HGBasePGAM2
Genetic variants : HAPMAPPGAM2
Somatic Mutations in Cancer : COSMICPGAM2 
CONAN: Copy Number AnalysisPGAM2 
Mutations and Diseases : HGMDPGAM2
OMIM261670    612931   
GENETests261670    612931   
Disease Genetic AssociationPGAM2
Huge Navigator PGAM2 [HugePedia]  PGAM2 [HugeCancerGEM]
Genomic VariantsPGAM2  PGAM2 [DGVbeta]
snp3D : Map Gene to Disease5224
General knowledge
Homologs : HomoloGenePGAM2
Homology/Alignments : Family Browser (UCSC)PGAM2
Phylogenetic Trees/Animal Genes : TreeFamPGAM2
Catalytic activity : Enzyme3.1.3.13 [ Enzyme-Expasy ]   3.1.3.13 [ Enzyme-SRS ]   3.1.3.13 [ IntEnz-EBI ]   3.1.3.13 [ BRENDA ]   3.1.3.13 [ KEGG ]   
Chemical/Protein Interactions : CTD5224
Chemical/Pharm GKB GenePA33226
Clinical trialPGAM2
Cancer Resource (Charite)ENSG00000164708
Ontology : AmiGObisphosphoglycerate mutase activity  bisphosphoglycerate 2-phosphatase activity  phosphoglycerate mutase activity  cellular_component  nucleus  cytosol  carbohydrate metabolic process  glucose metabolic process  gluconeogenesis  glycolysis  glycolysis  striated muscle contraction  spermatogenesis  small molecule metabolic process  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity  response to mercury ion  cofactor binding  
Ontology : EGO-EBIbisphosphoglycerate mutase activity  bisphosphoglycerate 2-phosphatase activity  phosphoglycerate mutase activity  cellular_component  nucleus  cytosol  carbohydrate metabolic process  glucose metabolic process  gluconeogenesis  glycolysis  glycolysis  striated muscle contraction  spermatogenesis  small molecule metabolic process  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity  response to mercury ion  cofactor binding  
Pathways : KEGGGlycolysis / Gluconeogenesis
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGenePGAM2
iHOPPGAM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:19:10 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.