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PGAM4 (phosphoglycerate mutase family member 4)

Identity

Alias_namesphosphoglycerate mutase family 4
Alias_symbol (synonym)dJ1000K24.1
PGAM3
PGAM-B
PGAM1
Other alias
HGNC (Hugo) PGAM4
LocusID (NCBI) 441531
Atlas_Id 71854
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 77967961 and ends at 77969638 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGAM4   21731
Cards
Entrez_Gene (NCBI)PGAM4  441531  phosphoglycerate mutase family member 4
AliasesPGAM-B; PGAM1; PGAM3; dJ1000K24.1
GeneCards (Weizmann)PGAM4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:77967961-77969638 [Contig_View]  PGAM4 [Vega]
TCGA cBioPortalPGAM4
AceView (NCBI)PGAM4
Genatlas (Paris)PGAM4
WikiGenes441531
SOURCE (Princeton)PGAM4
Genetics Home Reference (NIH)PGAM4
Genomic and cartography
GoldenPath hg38 (UCSC)PGAM4  -     chrX:77967961-77969638 -  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGAM4  -     Xq21.1   [Description]    (hg19-Feb_2009)
EnsemblPGAM4 - Xq21.1 [CytoView hg19]  PGAM4 - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBIPGAM4 [Mapview hg19]  PGAM4 [Mapview hg38]
OMIM300567   
Gene and transcription
Genbank (Entrez)BC148676 BG875904
RefSeq transcript (Entrez)NM_001029891
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGAM4
Cluster EST : UnigeneHs.632822 [ NCBI ]
CGAP (NCI)Hs.632822
Gene ExpressionPGAM4 [ NCBI-GEO ]   PGAM4 [ EBI - ARRAY_EXPRESS ]   PGAM4 [ SEEK ]   PGAM4 [ MEM ]
Gene Expression Viewer (FireBrowse)PGAM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441531
GTEX Portal (Tissue expression)PGAM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0Y7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0Y7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0Y7
Splice isoforms : SwissVarQ8N0Y7
PhosPhoSitePlusQ8N0Y7
Domaine pattern : Prosite (Expaxy)PG_MUTASE (PS00175)   
Domains : Interpro (EBI)His_Pase_superF_clade-1    His_PPase_superfam    PG/BPGM_mutase_AS    Phosphogly_mut1   
Domain families : Pfam (Sanger)His_Phos_1 (PF00300)   
Domain families : Pfam (NCBI)pfam00300   
Domain families : Smart (EMBL)PGAM (SM00855)  
Conserved Domain (NCBI)PGAM4
DMDM Disease mutations441531
Blocks (Seattle)PGAM4
SuperfamilyQ8N0Y7
Peptide AtlasQ8N0Y7
IPIIPI00374975   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0Y7
IntAct (EBI)Q8N0Y7
BioGRIDPGAM4
STRING (EMBL)PGAM4
ZODIACPGAM4
Ontologies - Pathways
QuickGOQ8N0Y7
Ontology : AmiGObisphosphoglycerate mutase activity  phosphoglycerate mutase activity  phosphoglycerate mutase activity  cytosol  gluconeogenesis  glycolytic process  glycolytic process  hydrolase activity  regulation of pentose-phosphate shunt  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity  extracellular exosome  sperm principal piece  positive regulation of flagellated sperm motility  
Ontology : EGO-EBIbisphosphoglycerate mutase activity  phosphoglycerate mutase activity  phosphoglycerate mutase activity  cytosol  gluconeogenesis  glycolytic process  glycolytic process  hydrolase activity  regulation of pentose-phosphate shunt  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity  extracellular exosome  sperm principal piece  positive regulation of flagellated sperm motility  
Pathways : KEGGGlycolysis / Gluconeogenesis    Glycine, serine and threonine metabolism   
NDEx NetworkPGAM4
Atlas of Cancer Signalling NetworkPGAM4
Wikipedia pathwaysPGAM4
Orthology - Evolution
OrthoDB441531
Phylogenetic Trees/Animal Genes : TreeFamPGAM4
HOVERGENQ8N0Y7
HOGENOMQ8N0Y7
Homologs : HomoloGenePGAM4
Homology/Alignments : Family Browser (UCSC)PGAM4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGAM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGAM4
dbVarPGAM4
ClinVarPGAM4
1000_GenomesPGAM4 
Exome Variant ServerPGAM4
ExAC (Exome Aggregation Consortium)PGAM4 (select the gene name)
Genetic variants : HAPMAP441531
Genomic Variants (DGV)PGAM4 [DGVbeta]
DECIPHERPGAM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGAM4 
Mutations
ICGC Data PortalPGAM4 
TCGA Data PortalPGAM4 
Broad Tumor PortalPGAM4
OASIS PortalPGAM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGAM4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGAM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PGAM4
DgiDB (Drug Gene Interaction Database)PGAM4
DoCM (Curated mutations)PGAM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGAM4 (select a term)
intoGenPGAM4
Cancer3DPGAM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300567   
Orphanet
MedgenPGAM4
Genetic Testing Registry PGAM4
NextProtQ8N0Y7 [Medical]
TSGene441531
GENETestsPGAM4
Huge Navigator PGAM4 [HugePedia]
snp3D : Map Gene to Disease441531
BioCentury BCIQPGAM4
ClinGenPGAM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441531
Chemical/Pharm GKB GenePA142671183
Clinical trialPGAM4
Miscellaneous
canSAR (ICR)PGAM4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGAM4
EVEXPGAM4
GoPubMedPGAM4
iHOPPGAM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:48:23 CEST 2017

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