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PGAP2 (post-GPI attachment to proteins 2)

Identity

Other namesCWH43-N
FRAG1
HPMRS3
MRT17
MRT21
HGNC (Hugo) PGAP2
LocusID (NCBI) 27315
Location 11p15.4
Location_base_pair Starts at 3819049 and ends at 3847601 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)PGAP2   17893
Cards
Entrez_Gene (NCBI)PGAP2  27315  post-GPI attachment to proteins 2
GeneCards (Weizmann)PGAP2
Ensembl (Hinxton)ENSG00000148985 [Gene_View]  chr11:3819049-3847601 [Contig_View]  PGAP2 [Vega]
ICGC DataPortalENSG00000148985
AceView (NCBI)PGAP2
Genatlas (Paris)PGAP2
WikiGenes27315
SOURCE (Princeton)NM_001145438 NM_001256235 NM_001256236 NM_001256237 NM_001256238 NM_001256239 NM_001256240 NM_001283038 NM_001283039 NM_001283040 NM_014489
Genomic and cartography
GoldenPath (UCSC)PGAP2  -  11p15.4   chr11:3819049-3847601 +  11p15.4   [Description]    (hg19-Feb_2009)
EnsemblPGAP2 - 11p15.4 [CytoView]
Mapping of homologs : NCBIPGAP2 [Mapview]
OMIM614207   615187   
Gene and transcription
Genbank (Entrez)AF159615 AK130030 AK292181 AK295202 AK301991
RefSeq transcript (Entrez)NM_001145438 NM_001256235 NM_001256236 NM_001256237 NM_001256238 NM_001256239 NM_001256240 NM_001283038 NM_001283039 NM_001283040 NM_014489
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_009237 NW_001838018 NW_004929378
Consensus coding sequences : CCDS (NCBI)PGAP2
Cluster EST : UnigeneHs.133968 [ NCBI ]
CGAP (NCI)Hs.133968
Alternative Splicing : Fast-db (Paris)GSHG0004556
Alternative Splicing GalleryENSG00000148985
Gene ExpressionPGAP2 [ NCBI-GEO ]     PGAP2 [ SEEK ]   PGAP2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHJ9 (Uniprot)
NextProtQ9UHJ9  [Medical]
With graphics : InterProQ9UHJ9
Splice isoforms : SwissVarQ9UHJ9 (Swissvar)
Domains : Interpro (EBI)Frag1/DRAM/Sfk1   
Related proteins : CluSTrQ9UHJ9
Domain families : Pfam (Sanger)Frag1 (PF10277)   
Domain families : Pfam (NCBI)pfam10277   
DMDM Disease mutations27315
Blocks (Seattle)Q9UHJ9
Human Protein AtlasENSG00000148985
Peptide AtlasQ9UHJ9
HPRD17016
IPIIPI00383797   IPI01018818   IPI00916016   IPI00442842   IPI00062297   IPI00888091   IPI00978731   IPI00978012   IPI00975922   IPI00981887   IPI00983673   IPI00982422   IPI00977934   IPI00985375   IPI00976585   IPI00975918   IPI00984819   IPI00977247   IPI00981300   IPI00982426   IPI00922242   IPI00979428   IPI00977224   IPI00982098   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHJ9
IntAct (EBI)Q9UHJ9
FunCoupENSG00000148985
BioGRIDPGAP2
IntegromeDBPGAP2
STRING (EMBL)PGAP2
Ontologies - Pathways
QuickGOQ9UHJ9
Ontology : AmiGOGolgi membrane  nucleus  endoplasmic reticulum membrane  GPI anchor biosynthetic process  protein transporter activity  protein transport  integral component of membrane  signal transduction in response to DNA damage  intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage  
Ontology : EGO-EBIGolgi membrane  nucleus  endoplasmic reticulum membrane  GPI anchor biosynthetic process  protein transporter activity  protein transport  integral component of membrane  signal transduction in response to DNA damage  intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage  
Protein Interaction DatabasePGAP2
Wikipedia pathwaysPGAP2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PGAP2
SNP (GeneSNP Utah)PGAP2
SNP : HGBasePGAP2
Genetic variants : HAPMAPPGAP2
1000_GenomesPGAP2 
ICGC programENSG00000148985 
CONAN: Copy Number AnalysisPGAP2 
Somatic Mutations in Cancer : COSMICPGAP2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)11:3819049-3847601
Mutations and Diseases : HGMDPGAP2
OMIM614207    615187   
MedgenPGAP2
GENETestsPGAP2
Disease Genetic AssociationPGAP2
Huge Navigator PGAP2 [HugePedia]  PGAP2 [HugeCancerGEM]
Genomic VariantsPGAP2  PGAP2 [DGVbeta]
Exome VariantPGAP2
dbVarPGAP2
ClinVarPGAP2
snp3D : Map Gene to Disease27315
General knowledge
Homologs : HomoloGenePGAP2
Homology/Alignments : Family Browser (UCSC)PGAP2
Phylogenetic Trees/Animal Genes : TreeFamPGAP2
Chemical/Protein Interactions : CTD27315
Chemical/Pharm GKB GenePA165543520
Clinical trialPGAP2
Cancer Resource (Charite)ENSG00000148985
Other databases
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
CoreMinePGAP2
GoPubMedPGAP2
iHOPPGAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:48:04 CET 2014

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