Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PGBD2 (piggyBac transposable element derived 2)

Identity

Other alias-
HGNC (Hugo) PGBD2
LocusID (NCBI) 267002
Atlas_Id 71858
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248906243 and ends at 248919146 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACBD6 (1q25.2) / PGBD2 (1q44)PGBD2 (1q44) / BCL7A (12q24.31)TOX (8q12.1) / PGBD2 (1q44)
ACBD6 PGBD2TOX PGBD2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGBD2   19399
Cards
Entrez_Gene (NCBI)PGBD2  267002  piggyBac transposable element derived 2
Aliases
GeneCards (Weizmann)PGBD2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:248906243-248919146 [Contig_View]  PGBD2 [Vega]
TCGA cBioPortalPGBD2
AceView (NCBI)PGBD2
Genatlas (Paris)PGBD2
WikiGenes267002
SOURCE (Princeton)PGBD2
Genetics Home Reference (NIH)PGBD2
Genomic and cartography
GoldenPath hg38 (UCSC)PGBD2  -     chr1:248906243-248919146 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGBD2  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblPGBD2 - 1q44 [CytoView hg19]  PGBD2 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIPGBD2 [Mapview hg19]  PGBD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI038307 AK123219 AK298248 BC063785 BX647065
RefSeq transcript (Entrez)NM_001017434 NM_170725
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGBD2
Cluster EST : UnigeneHs.602037 [ NCBI ]
CGAP (NCI)Hs.602037
Gene ExpressionPGBD2 [ NCBI-GEO ]   PGBD2 [ EBI - ARRAY_EXPRESS ]   PGBD2 [ SEEK ]   PGBD2 [ MEM ]
Gene Expression Viewer (FireBrowse)PGBD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)267002
GTEX Portal (Tissue expression)PGBD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P3X8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P3X8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P3X8
Splice isoforms : SwissVarQ6P3X8
PhosPhoSitePlusQ6P3X8
Domains : Interpro (EBI)PGBD   
Domain families : Pfam (Sanger)DDE_Tnp_1_7 (PF13843)   
Domain families : Pfam (NCBI)pfam13843   
Conserved Domain (NCBI)PGBD2
DMDM Disease mutations267002
Blocks (Seattle)PGBD2
SuperfamilyQ6P3X8
Peptide AtlasQ6P3X8
HPRD17837
IPIIPI00335939   IPI00555611   IPI01013443   
Protein Interaction databases
DIP (DOE-UCLA)Q6P3X8
IntAct (EBI)Q6P3X8
BioGRIDPGBD2
STRING (EMBL)PGBD2
ZODIACPGBD2
Ontologies - Pathways
QuickGOQ6P3X8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPGBD2
Atlas of Cancer Signalling NetworkPGBD2
Wikipedia pathwaysPGBD2
Orthology - Evolution
OrthoDB267002
Phylogenetic Trees/Animal Genes : TreeFamPGBD2
HOVERGENQ6P3X8
HOGENOMQ6P3X8
Homologs : HomoloGenePGBD2
Homology/Alignments : Family Browser (UCSC)PGBD2
Gene fusions - Rearrangements
Fusion: TCGA_MDACCACBD6 PGBD2
Fusion: TCGA_MDACCTOX PGBD2
Tumor Fusion PortalPGBD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGBD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGBD2
dbVarPGBD2
ClinVarPGBD2
1000_GenomesPGBD2 
Exome Variant ServerPGBD2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP267002
Genomic Variants (DGV)PGBD2 [DGVbeta]
DECIPHERPGBD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGBD2 
Mutations
ICGC Data PortalPGBD2 
TCGA Data PortalPGBD2 
Broad Tumor PortalPGBD2
OASIS PortalPGBD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGBD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGBD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PGBD2
DgiDB (Drug Gene Interaction Database)PGBD2
DoCM (Curated mutations)PGBD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGBD2 (select a term)
intoGenPGBD2
Cancer3DPGBD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPGBD2
MedgenPGBD2
Genetic Testing Registry PGBD2
NextProtQ6P3X8 [Medical]
TSGene267002
GENETestsPGBD2
Target ValidationPGBD2
Huge Navigator PGBD2 [HugePedia]
snp3D : Map Gene to Disease267002
BioCentury BCIQPGBD2
ClinGenPGBD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD267002
Chemical/Pharm GKB GenePA134877743
Clinical trialPGBD2
Miscellaneous
canSAR (ICR)PGBD2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGBD2
EVEXPGBD2
GoPubMedPGBD2
iHOPPGBD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:06:55 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.