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PGBD3 (piggyBac transposable element derived 3)

Identity

Alias_symbol (synonym)FLJ90201
Other alias-
HGNC (Hugo) PGBD3
LocusID (NCBI) 267004
Atlas_Id 50175
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 50723151 and ends at 50732327 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PGBD3 (10q11.23) / ERCC6 (10q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGBD3   19400
Cards
Entrez_Gene (NCBI)PGBD3  267004  piggyBac transposable element derived 3
Aliases
GeneCards (Weizmann)PGBD3
Ensembl hg19 (Hinxton)ENSG00000243251 [Gene_View]  chr10:50723151-50732327 [Contig_View]  PGBD3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000243251 [Gene_View]  chr10:50723151-50732327 [Contig_View]  PGBD3 [Vega]
ICGC DataPortalENSG00000243251
TCGA cBioPortalPGBD3
AceView (NCBI)PGBD3
Genatlas (Paris)PGBD3
WikiGenes267004
SOURCE (Princeton)PGBD3
Genetics Home Reference (NIH)PGBD3
Genomic and cartography
GoldenPath hg19 (UCSC)PGBD3  -     chr10:50723151-50732327 -  10q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PGBD3  -     10q11.23   [Description]    (hg38-Dec_2013)
EnsemblPGBD3 - 10q11.23 [CytoView hg19]  PGBD3 - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIPGBD3 [Mapview hg19]  PGBD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074682 AL133084 BC028954 BC063690 BG121679
RefSeq transcript (Entrez)NM_170753
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_009442 NG_033155 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)PGBD3
Cluster EST : UnigeneHs.49063 [ NCBI ]
CGAP (NCI)Hs.49063
Alternative Splicing GalleryENSG00000243251
Gene ExpressionPGBD3 [ NCBI-GEO ]   PGBD3 [ EBI - ARRAY_EXPRESS ]   PGBD3 [ SEEK ]   PGBD3 [ MEM ]
Gene Expression Viewer (FireBrowse)PGBD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)267004
GTEX Portal (Tissue expression)PGBD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N328   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N328  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N328
Splice isoforms : SwissVarQ8N328
PhosPhoSitePlusQ8N328
Domains : Interpro (EBI)PGBD   
Domain families : Pfam (Sanger)DDE_Tnp_1_7 (PF13843)   
Domain families : Pfam (NCBI)pfam13843   
Conserved Domain (NCBI)PGBD3
DMDM Disease mutations267004
Blocks (Seattle)PGBD3
SuperfamilyQ8N328
Human Protein AtlasENSG00000243251
Peptide AtlasQ8N328
HPRD17838
IPIIPI00844131   
Protein Interaction databases
DIP (DOE-UCLA)Q8N328
IntAct (EBI)Q8N328
FunCoupENSG00000243251
BioGRIDPGBD3
STRING (EMBL)PGBD3
ZODIACPGBD3
Ontologies - Pathways
QuickGOQ8N328
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPGBD3
Atlas of Cancer Signalling NetworkPGBD3
Wikipedia pathwaysPGBD3
Orthology - Evolution
OrthoDB267004
GeneTree (enSembl)ENSG00000243251
Phylogenetic Trees/Animal Genes : TreeFamPGBD3
HOVERGENQ8N328
HOGENOMQ8N328
Homologs : HomoloGenePGBD3
Homology/Alignments : Family Browser (UCSC)PGBD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGBD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGBD3
dbVarPGBD3
ClinVarPGBD3
1000_GenomesPGBD3 
Exome Variant ServerPGBD3
ExAC (Exome Aggregation Consortium)PGBD3 (select the gene name)
Genetic variants : HAPMAP267004
Genomic Variants (DGV)PGBD3 [DGVbeta]
DECIPHER (Syndromes)10:50723151-50732327  ENSG00000243251
CONAN: Copy Number AnalysisPGBD3 
Mutations
ICGC Data PortalPGBD3 
TCGA Data PortalPGBD3 
Broad Tumor PortalPGBD3
OASIS PortalPGBD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGBD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGBD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PGBD3
DgiDB (Drug Gene Interaction Database)PGBD3
DoCM (Curated mutations)PGBD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGBD3 (select a term)
intoGenPGBD3
Cancer3DPGBD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPGBD3
Genetic Testing Registry PGBD3
NextProtQ8N328 [Medical]
TSGene267004
GENETestsPGBD3
Huge Navigator PGBD3 [HugePedia]
snp3D : Map Gene to Disease267004
BioCentury BCIQPGBD3
ClinGenPGBD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD267004
Chemical/Pharm GKB GenePA134927747
Clinical trialPGBD3
Miscellaneous
canSAR (ICR)PGBD3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGBD3
EVEXPGBD3
GoPubMedPGBD3
iHOPPGBD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:08 CEST 2017

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