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PGBD3 (piggyBac transposable element derived 3)

Identity

Alias (NCBI)-
HGNC (Hugo) PGBD3
HGNC Alias symbFLJ90201
LocusID (NCBI) 267004
Atlas_Id 50175
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 49515105 and ends at 49524281 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PGBD3 (10q11.23) / ERCC6 (10q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PGBD3   19400
Cards
Entrez_Gene (NCBI)PGBD3    piggyBac transposable element derived 3
Aliases
GeneCards (Weizmann)PGBD3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:49515105-49524281 [Contig_View]  PGBD3 [Vega]
TCGA cBioPortalPGBD3
AceView (NCBI)PGBD3
Genatlas (Paris)PGBD3
SOURCE (Princeton)PGBD3
Genetics Home Reference (NIH)PGBD3
Genomic and cartography
GoldenPath hg38 (UCSC)PGBD3  -     chr10:49515105-49524281 -  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGBD3  -     10q11.23   [Description]    (hg19-Feb_2009)
GoldenPathPGBD3 - 10q11.23 [CytoView hg19]  PGBD3 - 10q11.23 [CytoView hg38]
Genome Data Viewer NCBIPGBD3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK074682 AL133084 BC028954 BC063690 BG121679
RefSeq transcript (Entrez)NM_170753
Consensus coding sequences : CCDS (NCBI)PGBD3
Gene ExpressionPGBD3 [ NCBI-GEO ]   PGBD3 [ EBI - ARRAY_EXPRESS ]   PGBD3 [ SEEK ]   PGBD3 [ MEM ]
Gene Expression Viewer (FireBrowse)PGBD3 [ Firebrowse - Broad ]
GenevisibleExpression of PGBD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)267004
GTEX Portal (Tissue expression)PGBD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N328   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N328  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N328
PhosPhoSitePlusQ8N328
Domains : Interpro (EBI)PGBD   
Domain families : Pfam (Sanger)DDE_Tnp_1_7 (PF13843)   
Domain families : Pfam (NCBI)pfam13843   
Conserved Domain (NCBI)PGBD3
SuperfamilyQ8N328
AlphaFold pdb e-kbQ8N328   
HPRD17838
Protein Interaction databases
DIP (DOE-UCLA)Q8N328
IntAct (EBI)Q8N328
BioGRIDPGBD3
STRING (EMBL)PGBD3
ZODIACPGBD3
Ontologies - Pathways
QuickGOQ8N328
Ontology : AmiGOnucleoplasm  nuclear body  sequence-specific DNA binding  sequence-specific DNA binding  
Ontology : EGO-EBInucleoplasm  nuclear body  sequence-specific DNA binding  sequence-specific DNA binding  
NDEx NetworkPGBD3
Atlas of Cancer Signalling NetworkPGBD3
Wikipedia pathwaysPGBD3
Orthology - Evolution
OrthoDB267004
Phylogenetic Trees/Animal Genes : TreeFamPGBD3
Homologs : HomoloGenePGBD3
Homology/Alignments : Family Browser (UCSC)PGBD3
Gene fusions - Rearrangements
Fusion : QuiverPGBD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGBD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGBD3
dbVarPGBD3
ClinVarPGBD3
MonarchPGBD3
1000_GenomesPGBD3 
Exome Variant ServerPGBD3
Varsome BrowserPGBD3
ACMGPGBD3 variants
VarityQ8N328
Genomic Variants (DGV)PGBD3 [DGVbeta]
DECIPHERPGBD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGBD3 
Mutations
ICGC Data PortalPGBD3 
TCGA Data PortalPGBD3 
Broad Tumor PortalPGBD3
OASIS PortalPGBD3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPGBD3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPGBD3
DgiDB (Drug Gene Interaction Database)PGBD3
DoCM (Curated mutations)PGBD3
CIViC (Clinical Interpretations of Variants in Cancer)PGBD3
Cancer3DPGBD3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPGBD3
MedgenPGBD3
Genetic Testing Registry PGBD3
NextProtQ8N328 [Medical]
GENETestsPGBD3
Target ValidationPGBD3
Huge Navigator PGBD3 [HugePedia]
ClinGenPGBD3
Clinical trials, drugs, therapy
MyCancerGenomePGBD3
Protein Interactions : CTDPGBD3
Pharm GKB GenePA134927747
PharosQ8N328
Clinical trialPGBD3
Miscellaneous
canSAR (ICR)PGBD3
HarmonizomePGBD3
DataMed IndexPGBD3
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPGBD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:25:02 CEST 2021

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