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PGBD4 (piggyBac transposable element derived 4)

Identity

Alias_symbol (synonym)FLJ32638
FLJ37497
Other alias-
HGNC (Hugo) PGBD4
LocusID (NCBI) 161779
Atlas_Id 71859
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34102073 and ends at 34104390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGBD4   19401
Cards
Entrez_Gene (NCBI)PGBD4  161779  piggyBac transposable element derived 4
Aliases
GeneCards (Weizmann)PGBD4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:34102073-34104390 [Contig_View]  PGBD4 [Vega]
TCGA cBioPortalPGBD4
AceView (NCBI)PGBD4
Genatlas (Paris)PGBD4
WikiGenes161779
SOURCE (Princeton)PGBD4
Genetics Home Reference (NIH)PGBD4
Genomic and cartography
GoldenPath hg38 (UCSC)PGBD4  -     chr15:34102073-34104390 +  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGBD4  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblPGBD4 - 15q14 [CytoView hg19]  PGBD4 - 15q14 [CytoView hg38]
Mapping of homologs : NCBIPGBD4 [Mapview hg19]  PGBD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057200 AK094816 AK289491 BC130441
RefSeq transcript (Entrez)NM_152595
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGBD4
Cluster EST : UnigeneHs.156317 [ NCBI ]
CGAP (NCI)Hs.156317
Gene ExpressionPGBD4 [ NCBI-GEO ]   PGBD4 [ EBI - ARRAY_EXPRESS ]   PGBD4 [ SEEK ]   PGBD4 [ MEM ]
Gene Expression Viewer (FireBrowse)PGBD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161779
GTEX Portal (Tissue expression)PGBD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DM1
Splice isoforms : SwissVarQ96DM1
PhosPhoSitePlusQ96DM1
Domains : Interpro (EBI)PGBD    PGBD4_C_Znf-ribbon   
Domain families : Pfam (Sanger)DDE_Tnp_1_7 (PF13843)    Tnp_zf-ribbon_2 (PF13842)   
Domain families : Pfam (NCBI)pfam13843    pfam13842   
Conserved Domain (NCBI)PGBD4
DMDM Disease mutations161779
Blocks (Seattle)PGBD4
SuperfamilyQ96DM1
Peptide AtlasQ96DM1
HPRD17839
IPIIPI00171741   
Protein Interaction databases
DIP (DOE-UCLA)Q96DM1
IntAct (EBI)Q96DM1
BioGRIDPGBD4
STRING (EMBL)PGBD4
ZODIACPGBD4
Ontologies - Pathways
QuickGOQ96DM1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPGBD4
Atlas of Cancer Signalling NetworkPGBD4
Wikipedia pathwaysPGBD4
Orthology - Evolution
OrthoDB161779
Phylogenetic Trees/Animal Genes : TreeFamPGBD4
HOVERGENQ96DM1
HOGENOMQ96DM1
Homologs : HomoloGenePGBD4
Homology/Alignments : Family Browser (UCSC)PGBD4
Gene fusions - Rearrangements
Fusion: Tumor Portal PGBD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGBD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGBD4
dbVarPGBD4
ClinVarPGBD4
1000_GenomesPGBD4 
Exome Variant ServerPGBD4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP161779
Genomic Variants (DGV)PGBD4 [DGVbeta]
DECIPHERPGBD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGBD4 
Mutations
ICGC Data PortalPGBD4 
TCGA Data PortalPGBD4 
Broad Tumor PortalPGBD4
OASIS PortalPGBD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGBD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGBD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PGBD4
DgiDB (Drug Gene Interaction Database)PGBD4
DoCM (Curated mutations)PGBD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGBD4 (select a term)
intoGenPGBD4
Cancer3DPGBD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet<R>MedgenPGBD4
Genetic Testing Registry PGBD4
NextProtQ96DM1 [Medical]
TSGene161779
GENETestsPGBD4
Target ValidationPGBD4
Huge Navigator PGBD4 [HugePedia]
snp3D : Map Gene to Disease161779
BioCentury BCIQPGBD4
ClinGenPGBD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161779
Chemical/Pharm GKB GenePA134885912
Clinical trialPGBD4
Miscellaneous
canSAR (ICR)PGBD4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGBD4
EVEXPGBD4
GoPubMedPGBD4
iHOPPGBD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:22:20 CET 2017

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