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PGBD5 (piggyBac transposable element derived 5)

Identity

Alias (NCBI)-
HGNC (Hugo) PGBD5
HGNC Alias symbDKFZp761A0620
FLJ11413
LocusID (NCBI) 79605
Atlas_Id 57053
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 230314490 and ends at 230426332 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCC10 (6p21.1) / PGBD5 (1q42.13)EGLN1 (1q42.2) / PGBD5 (1q42.13)PGBD5 (1q42.13) / HBS1L (6q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PGBD5   19405
Cards
Entrez_Gene (NCBI)PGBD5    piggyBac transposable element derived 5
Aliases
GeneCards (Weizmann)PGBD5
Ensembl hg19 (Hinxton)ENSG00000177614 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177614 [Gene_View]  ENSG00000177614 [Sequence]  chr1:230314490-230426332 [Contig_View]  PGBD5 [Vega]
ICGC DataPortalENSG00000177614
TCGA cBioPortalPGBD5
AceView (NCBI)PGBD5
Genatlas (Paris)PGBD5
SOURCE (Princeton)PGBD5
Genetics Home Reference (NIH)PGBD5
Genomic and cartography
GoldenPath hg38 (UCSC)PGBD5  -     chr1:230314490-230426332 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGBD5  -     1q42.13   [Description]    (hg19-Feb_2009)
GoldenPathPGBD5 - 1q42.13 [CytoView hg19]  PGBD5 - 1q42.13 [CytoView hg38]
ImmunoBaseENSG00000177614
Genome Data Viewer NCBIPGBD5 [Mapview hg19]  
OMIM616791   
Gene and transcription
Genbank (Entrez)AK021475 AK297321 AK315968 AL833243 BC013901
RefSeq transcript (Entrez)NM_001258311 NM_024554
Consensus coding sequences : CCDS (NCBI)PGBD5
Gene ExpressionPGBD5 [ NCBI-GEO ]   PGBD5 [ EBI - ARRAY_EXPRESS ]   PGBD5 [ SEEK ]   PGBD5 [ MEM ]
Gene Expression Viewer (FireBrowse)PGBD5 [ Firebrowse - Broad ]
GenevisibleExpression of PGBD5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79605
GTEX Portal (Tissue expression)PGBD5
Human Protein AtlasENSG00000177614-PGBD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N414   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N414  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N414
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ8N414
Domains : Interpro (EBI)PGBD    PGBD5   
Domain families : Pfam (Sanger)DDE_Tnp_1_7 (PF13843)   
Domain families : Pfam (NCBI)pfam13843   
Conserved Domain (NCBI)PGBD5
SuperfamilyQ8N414
AlphaFold pdb e-kbQ8N414   
Human Protein Atlas [tissue]ENSG00000177614-PGBD5 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8N414
IntAct (EBI)Q8N414
BioGRIDPGBD5
STRING (EMBL)PGBD5
ZODIACPGBD5
Ontologies - Pathways
QuickGOQ8N414
Ontology : AmiGOendonuclease activity  transposase activity  transposase activity  transposase activity  nucleus  nucleus  nucleoplasm  nucleic acid phosphodiester bond hydrolysis  non-replicative transposition, DNA-mediated  non-replicative transposition, DNA-mediated  
Ontology : EGO-EBIendonuclease activity  transposase activity  transposase activity  transposase activity  nucleus  nucleus  nucleoplasm  nucleic acid phosphodiester bond hydrolysis  non-replicative transposition, DNA-mediated  non-replicative transposition, DNA-mediated  
NDEx NetworkPGBD5
Atlas of Cancer Signalling NetworkPGBD5
Wikipedia pathwaysPGBD5
Orthology - Evolution
OrthoDB79605
GeneTree (enSembl)ENSG00000177614
Phylogenetic Trees/Animal Genes : TreeFamPGBD5
Homologs : HomoloGenePGBD5
Homology/Alignments : Family Browser (UCSC)PGBD5
Gene fusions - Rearrangements
Fusion : QuiverPGBD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGBD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGBD5
dbVarPGBD5
ClinVarPGBD5
MonarchPGBD5
1000_GenomesPGBD5 
Exome Variant ServerPGBD5
GNOMAD BrowserENSG00000177614
Varsome BrowserPGBD5
ACMGPGBD5 variants
VarityQ8N414
Genomic Variants (DGV)PGBD5 [DGVbeta]
DECIPHERPGBD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGBD5 
Mutations
ICGC Data PortalPGBD5 
TCGA Data PortalPGBD5 
Broad Tumor PortalPGBD5
OASIS PortalPGBD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGBD5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPGBD5
Mutations and Diseases : HGMDPGBD5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPGBD5
DgiDB (Drug Gene Interaction Database)PGBD5
DoCM (Curated mutations)PGBD5
CIViC (Clinical Interpretations of Variants in Cancer)PGBD5
Cancer3DPGBD5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616791   
Orphanet
DisGeNETPGBD5
MedgenPGBD5
Genetic Testing Registry PGBD5
NextProtQ8N414 [Medical]
GENETestsPGBD5
Target ValidationPGBD5
Huge Navigator PGBD5 [HugePedia]
ClinGenPGBD5
Clinical trials, drugs, therapy
MyCancerGenomePGBD5
Protein Interactions : CTDPGBD5
Pharm GKB GenePA134905621
PharosQ8N414
Clinical trialPGBD5
Miscellaneous
canSAR (ICR)PGBD5
HarmonizomePGBD5
DataMed IndexPGBD5
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPGBD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:25:02 CEST 2021

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