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PGBD5 (piggyBac transposable element derived 5)

Identity

Alias_symbol (synonym)DKFZp761A0620
FLJ11413
Other alias-
HGNC (Hugo) PGBD5
LocusID (NCBI) 79605
Atlas_Id 71860
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 230321646 and ends at 230425928 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABCC10 (6p21.1) / PGBD5 (1q42.13)EGLN1 (1q42.2) / PGBD5 (1q42.13)PGBD5 (1q42.13) / HBS1L (6q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGBD5   19405
Cards
Entrez_Gene (NCBI)PGBD5  79605  piggyBac transposable element derived 5
Aliases
GeneCards (Weizmann)PGBD5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:230321646-230425928 [Contig_View]  PGBD5 [Vega]
TCGA cBioPortalPGBD5
AceView (NCBI)PGBD5
Genatlas (Paris)PGBD5
WikiGenes79605
SOURCE (Princeton)PGBD5
Genetics Home Reference (NIH)PGBD5
Genomic and cartography
GoldenPath hg38 (UCSC)PGBD5  -     chr1:230321646-230425928 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGBD5  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblPGBD5 - 1q42.13 [CytoView hg19]  PGBD5 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIPGBD5 [Mapview hg19]  PGBD5 [Mapview hg38]
OMIM616791   
Gene and transcription
Genbank (Entrez)AK021475 AK297321 AK315968 AL833243 BC013901
RefSeq transcript (Entrez)NM_001258311 NM_024554
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGBD5
Cluster EST : UnigeneHs.520463 [ NCBI ]
CGAP (NCI)Hs.520463
Gene ExpressionPGBD5 [ NCBI-GEO ]   PGBD5 [ EBI - ARRAY_EXPRESS ]   PGBD5 [ SEEK ]   PGBD5 [ MEM ]
Gene Expression Viewer (FireBrowse)PGBD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79605
GTEX Portal (Tissue expression)PGBD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N414   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N414  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N414
Splice isoforms : SwissVarQ8N414
PhosPhoSitePlusQ8N414
Domains : Interpro (EBI)PGBD   
Domain families : Pfam (Sanger)DDE_Tnp_1_7 (PF13843)   
Domain families : Pfam (NCBI)pfam13843   
Conserved Domain (NCBI)PGBD5
DMDM Disease mutations79605
Blocks (Seattle)PGBD5
SuperfamilyQ8N414
Peptide AtlasQ8N414
HPRD10148
IPIIPI00296532   IPI00002237   IPI00982931   
Protein Interaction databases
DIP (DOE-UCLA)Q8N414
IntAct (EBI)Q8N414
BioGRIDPGBD5
STRING (EMBL)PGBD5
ZODIACPGBD5
Ontologies - Pathways
QuickGOQ8N414
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkPGBD5
Atlas of Cancer Signalling NetworkPGBD5
Wikipedia pathwaysPGBD5
Orthology - Evolution
OrthoDB79605
Phylogenetic Trees/Animal Genes : TreeFamPGBD5
HOVERGENQ8N414
HOGENOMQ8N414
Homologs : HomoloGenePGBD5
Homology/Alignments : Family Browser (UCSC)PGBD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGBD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGBD5
dbVarPGBD5
ClinVarPGBD5
1000_GenomesPGBD5 
Exome Variant ServerPGBD5
ExAC (Exome Aggregation Consortium)PGBD5 (select the gene name)
Genetic variants : HAPMAP79605
Genomic Variants (DGV)PGBD5 [DGVbeta]
DECIPHERPGBD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGBD5 
Mutations
ICGC Data PortalPGBD5 
TCGA Data PortalPGBD5 
Broad Tumor PortalPGBD5
OASIS PortalPGBD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGBD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGBD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PGBD5
DgiDB (Drug Gene Interaction Database)PGBD5
DoCM (Curated mutations)PGBD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGBD5 (select a term)
intoGenPGBD5
Cancer3DPGBD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616791   
Orphanet
MedgenPGBD5
Genetic Testing Registry PGBD5
NextProtQ8N414 [Medical]
TSGene79605
GENETestsPGBD5
Target ValidationPGBD5
Huge Navigator PGBD5 [HugePedia]
snp3D : Map Gene to Disease79605
BioCentury BCIQPGBD5
ClinGenPGBD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79605
Chemical/Pharm GKB GenePA134905621
Clinical trialPGBD5
Miscellaneous
canSAR (ICR)PGBD5 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGBD5
EVEXPGBD5
GoPubMedPGBD5
iHOPPGBD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:09 CEST 2017

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