Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PGC (progastricsin (pepsinogen C))

Identity

Other namesPEPC
PGII
HGNC (Hugo) PGC
LocusID (NCBI) 5225
Location 6p21.1
Location_base_pair Starts at 41708576 and ends at 41715139 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PGC   8890
Entrez_Gene (NCBI)PGC  5225  progastricsin (pepsinogen C)
Cards
GeneCards (Weizmann)PGC
Ensembl (Hinxton)ENSG00000096088 [Gene_View]  chr6:41708576-41715139 [Contig_View]  PGC [Vega]
AceView (NCBI)PGC
Genatlas (Paris)PGC
SOURCE (Stanford)NM_001166424 NM_002630
Genomic and cartography
GoldenPath (UCSC)PGC  -  6p21.1   chr6:41708576-41715139 -  6p21.1   [Description]    (hg19-Feb_2009)
EnsemblPGC - 6p21.1 [CytoView]
Mapping of homologs : NCBIPGC [Mapview]
OMIM169740   
Gene and transcription
Genbank (Entrez)AK223274 AK301298 AK301325 BC042578 BC073740
RefSeq transcript (SRS)NM_001166424 NM_002630
RefSeq transcript (Entrez)NM_001166424 NM_002630
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_007592 NW_001838981 NW_004078026
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_007592 NW_001838981 NW_004078026
Consensus coding sequences : CCDS (NCBI)PGC
Cluster EST : UnigeneHs.1867 [ SRS ] Hs.1867 [ NCBI ]
CGAP (NCI)Hs.1867
Alternative Splicing : Fast-db (Paris)GSHG0026605
Alternative Splicing GalleryENSG00000096088
Gene ExpressionPGC [ NCBI-GEO ]   PGC [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20142 (SRS) P20142 (Uniprot)
NextProtP20142
With graphics : InterProP20142
Splice isoforms : SwissVarP20142(Swissvar)
Domaine pattern : Prosite (SRS)ASP_PROTEASE (PS00141)   
Domaine pattern : Prosite (Expaxy)ASP_PROTEASE (PS00141)   
Domains : Interpro (SRS)Peptidase_A1    Peptidase_aspartic    Peptidase_aspartic_AS    Peptidase_aspartic_catalytic    Propep_A1   
Domains : Interpro (EBI)Peptidase_A1    Peptidase_aspartic    Peptidase_aspartic_AS    Peptidase_aspartic_catalytic    Propep_A1   
Related proteins : CluSTrP20142
Domain families : Pfam (SRS)A1_Propeptide (PF07966)    Asp (PF00026)   
Domain families : Pfam (Sanger)A1_Propeptide (PF07966)    Asp (PF00026)   
Domain families : Pfam (NCBI)pfam07966    pfam00026   
DMDM5225
Blocks (Seattle)P20142
PDB (SRS)1AVF    1HTR   
PDB (PDBSum)1AVF    1HTR   
PDB (IMB)1AVF    1HTR   
PDB (RSDB)1AVF    1HTR   
Human Protein AtlasENSG00000096088
HPRD01357
IPIIPI00022213   IPI00383359   IPI00910787   IPI00607684   IPI00792533   
Protein Interaction databases
DIP (DOE-UCLA)P20142
IntAct (EBI)P20142
FunCoupENSG00000096088
REACTOMEPGC
Protein Interaction Database5225
BioGRIDPGC
InParanoidP20142
Interologous Interaction database P20142
IntegromeDBPGC
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PGC
SNP (GeneSNP Utah)PGC
SNP : HGBasePGC
Genetic variants : HAPMAPPGC
Somatic Mutations in Cancer : COSMICPGC 
CONAN: Copy Number AnalysisPGC 
Mutations and Diseases : HGMDPGC
OMIM169740   
GENETests169740   
Disease Genetic AssociationPGC
Huge Navigator PGC [HugePedia]  PGC [HugeCancerGEM]
Genomic VariantsPGC  PGC [DGVbeta]
snp3D : Map Gene to Disease5225
General knowledge
Homologs : HomoloGenePGC
Homology/Alignments : Family Browser (UCSC)PGC
Phylogenetic Trees/Animal Genes : TreeFamPGC
Catalytic activity : Enzyme3.4.23.3 [ Enzyme-Expasy ]   3.4.23.3 [ Enzyme-SRS ]   3.4.23.3 [ IntEnz-EBI ]   3.4.23.3 [ BRENDA ]   3.4.23.3 [ KEGG ]   
Chemical/Protein Interactions : CTD5225
Chemical/Pharm GKB GenePA33228
Clinical trialPGC
Cancer Resource (Charite)ENSG00000096088
Ontology : AmiGOaspartic-type endopeptidase activity  extracellular space  nucleus  nucleolus  nucleolus  proteolysis  digestion  
Ontology : EGO-EBIaspartic-type endopeptidase activity  extracellular space  nucleus  nucleolus  nucleolus  proteolysis  digestion  
Other databases
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
PubGenePGC
iHOPPGC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:29:51 CEST 2013
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