Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PGCP1 (progastricsin pseudogene 1)

Identity

Alias_namesprogastricsin (pepsinogen C) pseudogene 1
Other alias-
HGNC (Hugo) PGCP1
LocusID (NCBI) 441897
Atlas_Id 71861
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 111384519 and ends at 111389851 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGCP1   39503
Cards
Entrez_Gene (NCBI)PGCP1  441897  progastricsin pseudogene 1
Aliases
GeneCards (Weizmann)PGCP1
Ensembl hg19 (Hinxton)ENSG00000227179 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227179 [Gene_View]  chr1:111384519-111389851 [Contig_View]  PGCP1 [Vega]
ICGC DataPortalENSG00000227179
TCGA cBioPortalPGCP1
AceView (NCBI)PGCP1
Genatlas (Paris)PGCP1
WikiGenes441897
SOURCE (Princeton)PGCP1
Genetics Home Reference (NIH)PGCP1
Genomic and cartography
GoldenPath hg38 (UCSC)PGCP1  -     chr1:111384519-111389851 -  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGCP1  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblPGCP1 - 1p13.2 [CytoView hg19]  PGCP1 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIPGCP1 [Mapview hg19]  PGCP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DV080281 DV080282
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGCP1
Cluster EST : UnigeneHs.568387 [ NCBI ]
CGAP (NCI)Hs.568387
Alternative Splicing GalleryENSG00000227179
Gene ExpressionPGCP1 [ NCBI-GEO ]   PGCP1 [ EBI - ARRAY_EXPRESS ]   PGCP1 [ SEEK ]   PGCP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PGCP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)441897
GTEX Portal (Tissue expression)PGCP1
Human Protein AtlasENSG00000227179-PGCP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PGCP1
DMDM Disease mutations441897
Blocks (Seattle)PGCP1
Human Protein Atlas [tissue]ENSG00000227179-PGCP1 [tissue]
Protein Interaction databases
FunCoupENSG00000227179
BioGRIDPGCP1
STRING (EMBL)PGCP1
ZODIACPGCP1
Ontologies - Pathways
Huge Navigator PGCP1 [HugePedia]
snp3D : Map Gene to Disease441897
BioCentury BCIQPGCP1
ClinGenPGCP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441897
Clinical trialPGCP1
Miscellaneous
canSAR (ICR)PGCP1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGCP1
EVEXPGCP1
GoPubMedPGCP1
iHOPPGCP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:20 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.