Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PGGHG (protein-glucosylgalactosylhydroxylysine glucosidase)

Identity

Alias_namesATHL1
ATH1, acid trehalase-like 1 (yeast)
Alias_symbol (synonym)FLJ22635
Other alias
HGNC (Hugo) PGGHG
LocusID (NCBI) 80162
Atlas_Id 78527
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 289138 and ends at 295688 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGGHG   26210
Cards
Entrez_Gene (NCBI)PGGHG  80162  protein-glucosylgalactosylhydroxylysine glucosidase
AliasesATHL1
GeneCards (Weizmann)PGGHG
Ensembl hg19 (Hinxton)ENSG00000142102 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142102 [Gene_View]  chr11:289138-295688 [Contig_View]  PGGHG [Vega]
ICGC DataPortalENSG00000142102
TCGA cBioPortalPGGHG
AceView (NCBI)PGGHG
Genatlas (Paris)PGGHG
WikiGenes80162
SOURCE (Princeton)PGGHG
Genetics Home Reference (NIH)PGGHG
Genomic and cartography
GoldenPath hg38 (UCSC)PGGHG  -     chr11:289138-295688 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGGHG  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblPGGHG - 11p15.5 [CytoView hg19]  PGGHG - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIPGGHG [Mapview hg19]  PGGHG [Mapview hg38]
OMIM617032   
Gene and transcription
Genbank (Entrez)AI217945 AI919161 AK026288 AK074155 AK090428
RefSeq transcript (Entrez)NM_025092
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGGHG
Cluster EST : UnigeneHs.353181 [ NCBI ]
CGAP (NCI)Hs.353181
Alternative Splicing GalleryENSG00000142102
Gene ExpressionPGGHG [ NCBI-GEO ]   PGGHG [ EBI - ARRAY_EXPRESS ]   PGGHG [ SEEK ]   PGGHG [ MEM ]
Gene Expression Viewer (FireBrowse)PGGHG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80162
GTEX Portal (Tissue expression)PGGHG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32M88   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32M88  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32M88
Splice isoforms : SwissVarQ32M88
PhosPhoSitePlusQ32M88
Domains : Interpro (EBI)6-hairpin_glycosidase-like    6hp_glycosidase    Glyco_hydro_65_M   
Domain families : Pfam (Sanger)Glyco_hydro_65m (PF03632)   
Domain families : Pfam (NCBI)pfam03632   
Conserved Domain (NCBI)PGGHG
DMDM Disease mutations80162
Blocks (Seattle)PGGHG
SuperfamilyQ32M88
Human Protein AtlasENSG00000142102
Peptide AtlasQ32M88
HPRD07999
IPIIPI00152739   IPI00747166   IPI00386188   IPI00744190   IPI00917437   IPI00985088   IPI00973724   
Protein Interaction databases
DIP (DOE-UCLA)Q32M88
IntAct (EBI)Q32M88
FunCoupENSG00000142102
BioGRIDPGGHG
STRING (EMBL)PGGHG
ZODIACPGGHG
Ontologies - Pathways
QuickGOQ32M88
Ontology : AmiGOcytosol  carbohydrate metabolic process  protein-glucosylgalactosylhydroxylysine glucosidase activity  
Ontology : EGO-EBIcytosol  carbohydrate metabolic process  protein-glucosylgalactosylhydroxylysine glucosidase activity  
NDEx NetworkPGGHG
Atlas of Cancer Signalling NetworkPGGHG
Wikipedia pathwaysPGGHG
Orthology - Evolution
OrthoDB80162
GeneTree (enSembl)ENSG00000142102
Phylogenetic Trees/Animal Genes : TreeFamPGGHG
HOVERGENQ32M88
HOGENOMQ32M88
Homologs : HomoloGenePGGHG
Homology/Alignments : Family Browser (UCSC)PGGHG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGGHG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGGHG
dbVarPGGHG
ClinVarPGGHG
1000_GenomesPGGHG 
Exome Variant ServerPGGHG
ExAC (Exome Aggregation Consortium)PGGHG (select the gene name)
Genetic variants : HAPMAP80162
Genomic Variants (DGV)PGGHG [DGVbeta]
DECIPHERPGGHG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGGHG 
Mutations
ICGC Data PortalPGGHG 
TCGA Data PortalPGGHG 
Broad Tumor PortalPGGHG
OASIS PortalPGGHG [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPGGHG
BioMutasearch PGGHG
DgiDB (Drug Gene Interaction Database)PGGHG
DoCM (Curated mutations)PGGHG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGGHG (select a term)
intoGenPGGHG
Cancer3DPGGHG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617032   
Orphanet
MedgenPGGHG
Genetic Testing Registry PGGHG
NextProtQ32M88 [Medical]
TSGene80162
GENETestsPGGHG
Huge Navigator PGGHG [HugePedia]
snp3D : Map Gene to Disease80162
BioCentury BCIQPGGHG
ClinGenPGGHG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80162
Chemical/Pharm GKB GenePA142672576
Clinical trialPGGHG
Miscellaneous
canSAR (ICR)PGGHG (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGGHG
EVEXPGGHG
GoPubMedPGGHG
iHOPPGGHG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:48:25 CEST 2017

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