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PGK1 (phosphoglycerate kinase 1)

Identity

Other namesHEL-S-68p
MIG10
PGKA
HGNC (Hugo) PGK1
LocusID (NCBI) 5230
Atlas_Id 41697
Location Xq21.1
Location_base_pair Starts at 77359666 and ends at 77382324 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EIF3K (19q13.2) / PGK1 (Xq21.1)PGK1 (Xq21.1) / TP53BP1 (15q15.3)SOX11 (2p25.2) / PGK1 (Xq21.1)
TMEM107 (17p13.1) / PGK1 (Xq21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGK1   8896
Cards
Entrez_Gene (NCBI)PGK1  5230  phosphoglycerate kinase 1
AliasesHEL-S-68p; MIG10; PGKA
GeneCards (Weizmann)PGK1
Ensembl hg19 (Hinxton)ENSG00000102144 [Gene_View]  chrX:77359666-77382324 [Contig_View]  PGK1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000102144 [Gene_View]  chrX:77359666-77382324 [Contig_View]  PGK1 [Vega]
ICGC DataPortalENSG00000102144
TCGA cBioPortalPGK1
AceView (NCBI)PGK1
Genatlas (Paris)PGK1
WikiGenes5230
SOURCE (Princeton)PGK1
Genomic and cartography
GoldenPath hg19 (UCSC)PGK1  -     chrX:77359666-77382324 +  Xq21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PGK1  -     Xq21.1   [Description]    (hg38-Dec_2013)
EnsemblPGK1 - Xq21.1 [CytoView hg19]  PGK1 - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBIPGK1 [Mapview hg19]  PGK1 [Mapview hg38]
OMIM300653   311800   
Gene and transcription
Genbank (Entrez)AB062432 AK291081 AK295014 AK295182 AK298855
RefSeq transcript (Entrez)NM_000291
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_008862 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)PGK1
Cluster EST : UnigeneHs.78771 [ NCBI ]
CGAP (NCI)Hs.78771
Alternative Splicing GalleryENSG00000102144
Gene ExpressionPGK1 [ NCBI-GEO ]   PGK1 [ EBI - ARRAY_EXPRESS ]   PGK1 [ SEEK ]   PGK1 [ MEM ]
Gene Expression Viewer (FireBrowse)PGK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5230
GTEX Portal (Tissue expression)PGK1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00558 (Uniprot)
NextProtP00558  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP00558
Splice isoforms : SwissVarP00558 (Swissvar)
Catalytic activity : Enzyme2.7.2.3 [ Enzyme-Expasy ]   2.7.2.32.7.2.3 [ IntEnz-EBI ]   2.7.2.3 [ BRENDA ]   2.7.2.3 [ KEGG ]   
PhosPhoSitePlusP00558
Domaine pattern : Prosite (Expaxy)PGLYCERATE_KINASE (PS00111)   
Domains : Interpro (EBI)Phosphoglycerate_kinase    Phosphoglycerate_kinase_C    Phosphoglycerate_kinase_CS    Phosphoglycerate_kinase_N   
Domain families : Pfam (Sanger)PGK (PF00162)   
Domain families : Pfam (NCBI)pfam00162   
DMDM Disease mutations5230
Blocks (Seattle)PGK1
PDB (SRS)2WZB    2WZC    2WZD    2X13    2X14    2X15    2XE6    2XE7    2XE8    2Y3I    2YBE    2ZGV    3C39    3C3A    3C3B    3C3C    3ZOZ    4AXX    4O33   
PDB (PDBSum)2WZB    2WZC    2WZD    2X13    2X14    2X15    2XE6    2XE7    2XE8    2Y3I    2YBE    2ZGV    3C39    3C3A    3C3B    3C3C    3ZOZ    4AXX    4O33   
PDB (IMB)2WZB    2WZC    2WZD    2X13    2X14    2X15    2XE6    2XE7    2XE8    2Y3I    2YBE    2ZGV    3C39    3C3A    3C3B    3C3C    3ZOZ    4AXX    4O33   
PDB (RSDB)2WZB    2WZC    2WZD    2X13    2X14    2X15    2XE6    2XE7    2XE8    2Y3I    2YBE    2ZGV    3C39    3C3A    3C3B    3C3C    3ZOZ    4AXX    4O33   
Structural Biology KnowledgeBase2WZB    2WZC    2WZD    2X13    2X14    2X15    2XE6    2XE7    2XE8    2Y3I    2YBE    2ZGV    3C39    3C3A    3C3B    3C3C    3ZOZ    4AXX    4O33   
SCOP (Structural Classification of Proteins)2WZB    2WZC    2WZD    2X13    2X14    2X15    2XE6    2XE7    2XE8    2Y3I    2YBE    2ZGV    3C39    3C3A    3C3B    3C3C    3ZOZ    4AXX    4O33   
CATH (Classification of proteins structures)2WZB    2WZC    2WZD    2X13    2X14    2X15    2XE6    2XE7    2XE8    2Y3I    2YBE    2ZGV    3C39    3C3A    3C3B    3C3C    3ZOZ    4AXX    4O33   
SuperfamilyP00558
Human Protein AtlasENSG00000102144
Peptide AtlasP00558
HPRD02412
IPIIPI00169383   IPI00909158   IPI00910974   IPI00916818   IPI01011912   
Protein Interaction databases
DIP (DOE-UCLA)P00558
IntAct (EBI)P00558
FunCoupENSG00000102144
BioGRIDPGK1
STRING (EMBL)PGK1
ZODIACPGK1
Ontologies - Pathways
QuickGOP00558
Ontology : AmiGOphosphoglycerate kinase activity  phosphoglycerate kinase activity  protein binding  ATP binding  cytosol  gluconeogenesis  membrane  phosphorylation  epithelial cell differentiation  membrane raft  canonical glycolysis  extracellular exosome  
Ontology : EGO-EBIphosphoglycerate kinase activity  phosphoglycerate kinase activity  protein binding  ATP binding  cytosol  gluconeogenesis  membrane  phosphorylation  epithelial cell differentiation  membrane raft  canonical glycolysis  extracellular exosome  
Pathways : KEGGGlycolysis / Gluconeogenesis    HIF-1 signaling pathway   
NDEx Network
Atlas of Cancer Signalling NetworkPGK1
Wikipedia pathwaysPGK1
Orthology - Evolution
OrthoDB5230
GeneTree (enSembl)ENSG00000102144
Phylogenetic Trees/Animal Genes : TreeFamPGK1
Homologs : HomoloGenePGK1
Homology/Alignments : Family Browser (UCSC)PGK1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerPGK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGK1
dbVarPGK1
ClinVarPGK1
1000_GenomesPGK1 
Exome Variant ServerPGK1
ExAC (Exome Aggregation Consortium)PGK1 (select the gene name)
Genetic variants : HAPMAP5230
Genomic Variants (DGV)PGK1 [DGVbeta]
Mutations
ICGC Data PortalPGK1 
TCGA Data PortalPGK1 
Broad Tumor PortalPGK1
OASIS PortalPGK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGK1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PGK1
DgiDB (Drug Gene Interaction Database)PGK1
DoCM (Curated mutations)PGK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGK1 (select a term)
intoGenPGK1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:77359666-77382324  ENSG00000102144
CONAN: Copy Number AnalysisPGK1 
Mutations and Diseases : HGMDPGK1
OMIM300653    311800   
MedgenPGK1
Genetic Testing Registry PGK1
NextProtP00558 [Medical]
TSGene5230
GENETestsPGK1
Huge Navigator PGK1 [HugePedia]
snp3D : Map Gene to Disease5230
BioCentury BCIQPGK1
ClinGenPGK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5230
Chemical/Pharm GKB GenePA33234
Clinical trialPGK1
Miscellaneous
canSAR (ICR)PGK1 (select the gene name)
Probes
Litterature
PubMed125 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGK1
EVEXPGK1
GoPubMedPGK1
iHOPPGK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:15:31 CEST 2016

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