Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PGM2 (phosphoglucomutase 2)

Identity

Alias_symbol (synonym)FLJ10983
Other aliasMSTP006
HGNC (Hugo) PGM2
LocusID (NCBI) 55276
Atlas_Id 71867
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 37828282 and ends at 37864559 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PGM2 (4p14) / PGM2 (4p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGM2   8906
Cards
Entrez_Gene (NCBI)PGM2  55276  phosphoglucomutase 2
AliasesMSTP006
GeneCards (Weizmann)PGM2
Ensembl hg19 (Hinxton)ENSG00000169299 [Gene_View]  chr4:37828282-37864559 [Contig_View]  PGM2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169299 [Gene_View]  chr4:37828282-37864559 [Contig_View]  PGM2 [Vega]
ICGC DataPortalENSG00000169299
TCGA cBioPortalPGM2
AceView (NCBI)PGM2
Genatlas (Paris)PGM2
WikiGenes55276
SOURCE (Princeton)PGM2
Genetics Home Reference (NIH)PGM2
Genomic and cartography
GoldenPath hg19 (UCSC)PGM2  -     chr4:37828282-37864559 +  4p14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PGM2  -     4p14   [Description]    (hg38-Dec_2013)
EnsemblPGM2 - 4p14 [CytoView hg19]  PGM2 - 4p14 [CytoView hg38]
Mapping of homologs : NCBIPGM2 [Mapview hg19]  PGM2 [Mapview hg38]
OMIM172000   
Gene and transcription
Genbank (Entrez)AF109360 AI955714 AK001845 AK223237 AK297752
RefSeq transcript (Entrez)NM_018290
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)PGM2
Cluster EST : UnigeneHs.607816 [ NCBI ]
CGAP (NCI)Hs.607816
Alternative Splicing GalleryENSG00000169299
Gene ExpressionPGM2 [ NCBI-GEO ]   PGM2 [ EBI - ARRAY_EXPRESS ]   PGM2 [ SEEK ]   PGM2 [ MEM ]
Gene Expression Viewer (FireBrowse)PGM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55276
GTEX Portal (Tissue expression)PGM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96G03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96G03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96G03
Splice isoforms : SwissVarQ96G03
Catalytic activity : Enzyme5.4.2.2 [ Enzyme-Expasy ]   5.4.2.25.4.2.2 [ IntEnz-EBI ]   5.4.2.2 [ BRENDA ]   5.4.2.2 [ KEGG ]   
PhosPhoSitePlusQ96G03
Domaine pattern : Prosite (Expaxy)PGM_PMM (PS00710)   
Domains : Interpro (EBI)A-D-PHexomutase_a/b/a-I    A-D-PHexomutase_a/b/a-I/II/III    A-D-PHexomutase_a/b/a-II    A-D-PHexomutase_a/b/a-III    A-D-PHexomutase_C    A-D-PHexomutase_CS    Alpha-D-phosphohexomutase_SF   
Domain families : Pfam (Sanger)PGM_PMM_I (PF02878)    PGM_PMM_II (PF02879)    PGM_PMM_III (PF02880)    PGM_PMM_IV (PF00408)   
Domain families : Pfam (NCBI)pfam02878    pfam02879    pfam02880    pfam00408   
Conserved Domain (NCBI)PGM2
DMDM Disease mutations55276
Blocks (Seattle)PGM2
SuperfamilyQ96G03
Human Protein AtlasENSG00000169299
Peptide AtlasQ96G03
HPRD11761
IPIIPI00550364   IPI01014786   IPI01015267   IPI00966505   IPI00966846   IPI00965186   
Protein Interaction databases
DIP (DOE-UCLA)Q96G03
IntAct (EBI)Q96G03
FunCoupENSG00000169299
BioGRIDPGM2
STRING (EMBL)PGM2
ZODIACPGM2
Ontologies - Pathways
QuickGOQ96G03
Ontology : AmiGOmagnesium ion binding  phosphoglucomutase activity  protein binding  cytosol  cytosol  carbohydrate metabolic process  glycogen biosynthetic process  glycogen biosynthetic process  glycogen catabolic process  glucose metabolic process  glucose metabolic process  phosphopentomutase activity  galactose catabolic process  galactose catabolic process  small molecule metabolic process  deoxyribose phosphate catabolic process  extracellular exosome  
Ontology : EGO-EBImagnesium ion binding  phosphoglucomutase activity  protein binding  cytosol  cytosol  carbohydrate metabolic process  glycogen biosynthetic process  glycogen biosynthetic process  glycogen catabolic process  glucose metabolic process  glucose metabolic process  phosphopentomutase activity  galactose catabolic process  galactose catabolic process  small molecule metabolic process  deoxyribose phosphate catabolic process  extracellular exosome  
Pathways : KEGGGlycolysis / Gluconeogenesis    Pentose phosphate pathway    Galactose metabolism    Purine metabolism    Starch and sucrose metabolism    Amino sugar and nucleotide sugar metabolism   
NDEx NetworkPGM2
Atlas of Cancer Signalling NetworkPGM2
Wikipedia pathwaysPGM2
Orthology - Evolution
OrthoDB55276
GeneTree (enSembl)ENSG00000169299
Phylogenetic Trees/Animal Genes : TreeFamPGM2
HOVERGENQ96G03
HOGENOMQ96G03
Homologs : HomoloGenePGM2
Homology/Alignments : Family Browser (UCSC)PGM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGM2
dbVarPGM2
ClinVarPGM2
1000_GenomesPGM2 
Exome Variant ServerPGM2
ExAC (Exome Aggregation Consortium)PGM2 (select the gene name)
Genetic variants : HAPMAP55276
Genomic Variants (DGV)PGM2 [DGVbeta]
DECIPHER (Syndromes)4:37828282-37864559  ENSG00000169299
CONAN: Copy Number AnalysisPGM2 
Mutations
ICGC Data PortalPGM2 
TCGA Data PortalPGM2 
Broad Tumor PortalPGM2
OASIS PortalPGM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PGM2
DgiDB (Drug Gene Interaction Database)PGM2
DoCM (Curated mutations)PGM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGM2 (select a term)
intoGenPGM2
Cancer3DPGM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM172000   
Orphanet
MedgenPGM2
Genetic Testing Registry PGM2
NextProtQ96G03 [Medical]
TSGene55276
GENETestsPGM2
Huge Navigator PGM2 [HugePedia]
snp3D : Map Gene to Disease55276
BioCentury BCIQPGM2
ClinGenPGM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55276
Chemical/Pharm GKB GenePA33243
Clinical trialPGM2
Miscellaneous
canSAR (ICR)PGM2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGM2
EVEXPGM2
GoPubMedPGM2
iHOPPGM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:38:28 CET 2017

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