Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PGM3 (phosphoglucomutase 3)

Identity

Alias_symbol (synonym)AGM1
DKFZP434B187
PAGM
Other aliasIMD23
PGM 3
HGNC (Hugo) PGM3
LocusID (NCBI) 5238
Atlas_Id 51744
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 83164874 and ends at 83193293 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H2BE (6p22.2) / PGM3 (6q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGM3   8907
Cards
Entrez_Gene (NCBI)PGM3  5238  phosphoglucomutase 3
AliasesAGM1; IMD23; PAGM; PGM
GeneCards (Weizmann)PGM3
Ensembl hg19 (Hinxton)ENSG00000013375 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000013375 [Gene_View]  ENSG00000013375 [Sequence]  chr6:83164874-83193293 [Contig_View]  PGM3 [Vega]
ICGC DataPortalENSG00000013375
TCGA cBioPortalPGM3
AceView (NCBI)PGM3
Genatlas (Paris)PGM3
WikiGenes5238
SOURCE (Princeton)PGM3
Genetics Home Reference (NIH)PGM3
Genomic and cartography
GoldenPath hg38 (UCSC)PGM3  -     chr6:83164874-83193293 -  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGM3  -     6q14.1   [Description]    (hg19-Feb_2009)
EnsemblPGM3 - 6q14.1 [CytoView hg19]  PGM3 - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBIPGM3 [Mapview hg19]  PGM3 [Mapview hg38]
OMIM172100   615816   
Gene and transcription
Genbank (Entrez)AB032081 AF102265 AF180371 AK001365 AK021676
RefSeq transcript (Entrez)NM_001199917 NM_001199918 NM_001199919 NM_015599
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGM3
Cluster EST : UnigeneHs.661665 [ NCBI ]
CGAP (NCI)Hs.661665
Alternative Splicing GalleryENSG00000013375
Gene ExpressionPGM3 [ NCBI-GEO ]   PGM3 [ EBI - ARRAY_EXPRESS ]   PGM3 [ SEEK ]   PGM3 [ MEM ]
Gene Expression Viewer (FireBrowse)PGM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5238
GTEX Portal (Tissue expression)PGM3
Human Protein AtlasENSG00000013375-PGM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95394   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95394  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95394
Splice isoforms : SwissVarO95394
PhosPhoSitePlusO95394
Domaine pattern : Prosite (Expaxy)PGM_PMM (PS00710)   
Domains : Interpro (EBI)A-D-PHexomutase_a/b/a-I    A-D-PHexomutase_a/b/a-I/II/III    A-D-PHexomutase_C    A-D-PHexomutase_C_sf    A-D-PHexomutase_CS    PAGM   
Domain families : Pfam (Sanger)PGM_PMM_I (PF02878)    PGM_PMM_IV (PF00408)   
Domain families : Pfam (NCBI)pfam02878    pfam00408   
Conserved Domain (NCBI)PGM3
DMDM Disease mutations5238
Blocks (Seattle)PGM3
SuperfamilyO95394
Human Protein Atlas [tissue]ENSG00000013375-PGM3 [tissue]
Peptide AtlasO95394
HPRD01390
IPIIPI00941001   IPI00030116   IPI00966941   IPI00968239   IPI00965920   IPI00964551   IPI00967963   IPI00965342   IPI00967376   IPI00966305   IPI00967673   
Protein Interaction databases
DIP (DOE-UCLA)O95394
IntAct (EBI)O95394
FunCoupENSG00000013375
BioGRIDPGM3
STRING (EMBL)PGM3
ZODIACPGM3
Ontologies - Pathways
QuickGOO95394
Ontology : AmiGOmagnesium ion binding  phosphoacetylglucosamine mutase activity  phosphoacetylglucosamine mutase activity  phosphoacetylglucosamine mutase activity  phosphoacetylglucosamine mutase activity  phosphoglucomutase activity  cellular_component  cytosol  carbohydrate metabolic process  glucosamine metabolic process  UDP-N-acetylglucosamine biosynthetic process  UDP-N-acetylglucosamine biosynthetic process  UDP-N-acetylglucosamine biosynthetic process  UDP-N-acetylglucosamine biosynthetic process  protein N-linked glycosylation  protein O-linked glycosylation  spermatogenesis  glucose 1-phosphate metabolic process  hemopoiesis  
Ontology : EGO-EBImagnesium ion binding  phosphoacetylglucosamine mutase activity  phosphoacetylglucosamine mutase activity  phosphoacetylglucosamine mutase activity  phosphoacetylglucosamine mutase activity  phosphoglucomutase activity  cellular_component  cytosol  carbohydrate metabolic process  glucosamine metabolic process  UDP-N-acetylglucosamine biosynthetic process  UDP-N-acetylglucosamine biosynthetic process  UDP-N-acetylglucosamine biosynthetic process  UDP-N-acetylglucosamine biosynthetic process  protein N-linked glycosylation  protein O-linked glycosylation  spermatogenesis  glucose 1-phosphate metabolic process  hemopoiesis  
Pathways : KEGGAmino sugar and nucleotide sugar metabolism   
NDEx NetworkPGM3
Atlas of Cancer Signalling NetworkPGM3
Wikipedia pathwaysPGM3
Orthology - Evolution
OrthoDB5238
GeneTree (enSembl)ENSG00000013375
Phylogenetic Trees/Animal Genes : TreeFamPGM3
HOVERGENO95394
HOGENOMO95394
Homologs : HomoloGenePGM3
Homology/Alignments : Family Browser (UCSC)PGM3
Gene fusions - Rearrangements
Fusion : QuiverPGM3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGM3
dbVarPGM3
ClinVarPGM3
1000_GenomesPGM3 
Exome Variant ServerPGM3
ExAC (Exome Aggregation Consortium)ENSG00000013375
GNOMAD BrowserENSG00000013375
Varsome BrowserPGM3
Genetic variants : HAPMAP5238
Genomic Variants (DGV)PGM3 [DGVbeta]
DECIPHERPGM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGM3 
Mutations
ICGC Data PortalPGM3 
TCGA Data PortalPGM3 
Broad Tumor PortalPGM3
OASIS PortalPGM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PGM3
DgiDB (Drug Gene Interaction Database)PGM3
DoCM (Curated mutations)PGM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGM3 (select a term)
intoGenPGM3
Cancer3DPGM3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM172100    615816   
Orphanet23468   
DisGeNETPGM3
MedgenPGM3
Genetic Testing Registry PGM3
NextProtO95394 [Medical]
TSGene5238
GENETestsPGM3
Target ValidationPGM3
Huge Navigator PGM3 [HugePedia]
snp3D : Map Gene to Disease5238
BioCentury BCIQPGM3
ClinGenPGM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5238
Chemical/Pharm GKB GenePA33244
Clinical trialPGM3
Miscellaneous
canSAR (ICR)PGM3 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGM3
EVEXPGM3
GoPubMedPGM3
iHOPPGM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:29:38 CET 2018

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