Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PGM5-AS1 (PGM5 antisense RNA 1)

Identity

Alias_namesPGM5 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)FAM233A
Other alias
HGNC (Hugo) PGM5-AS1
LocusID (NCBI) 572558
Atlas_Id 71870
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 70970080 and ends at 70972782 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGM5-AS1   44181
Cards
Entrez_Gene (NCBI)PGM5-AS1  572558  PGM5 antisense RNA 1
AliasesFAM233A
GeneCards (Weizmann)PGM5-AS1
Ensembl hg19 (Hinxton)ENSG00000224958 [Gene_View]  chr9:70970080-70972782 [Contig_View]  PGM5-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000224958 [Gene_View]  chr9:70970080-70972782 [Contig_View]  PGM5-AS1 [Vega]
ICGC DataPortalENSG00000224958
TCGA cBioPortalPGM5-AS1
AceView (NCBI)PGM5-AS1
Genatlas (Paris)PGM5-AS1
WikiGenes572558
SOURCE (Princeton)PGM5-AS1
Genetics Home Reference (NIH)PGM5-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)PGM5-AS1  -     chr9:70970080-70972782 -  9q21.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PGM5-AS1  -     9q21.11   [Description]    (hg38-Dec_2013)
EnsemblPGM5-AS1 - 9q21.11 [CytoView hg19]  PGM5-AS1 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIPGM5-AS1 [Mapview hg19]  PGM5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098218 AY343894 BC017938 CB051276 HG502102
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)PGM5-AS1
Cluster EST : UnigeneHs.552819 [ NCBI ]
CGAP (NCI)Hs.552819
Alternative Splicing GalleryENSG00000224958
Gene ExpressionPGM5-AS1 [ NCBI-GEO ]   PGM5-AS1 [ EBI - ARRAY_EXPRESS ]   PGM5-AS1 [ SEEK ]   PGM5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PGM5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)572558
GTEX Portal (Tissue expression)PGM5-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PGM5-AS1
DMDM Disease mutations572558
Blocks (Seattle)PGM5-AS1
Human Protein AtlasENSG00000224958
Protein Interaction databases
FunCoupENSG00000224958
BioGRIDPGM5-AS1
STRING (EMBL)PGM5-AS1
ZODIACPGM5-AS1
Ontologies - Pathways
Huge Navigator PGM5-AS1 [HugePedia]
snp3D : Map Gene to Disease572558
BioCentury BCIQPGM5-AS1
ClinGenPGM5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD572558
Clinical trialPGM5-AS1
Miscellaneous
canSAR (ICR)PGM5-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGM5-AS1
EVEXPGM5-AS1
GoPubMedPGM5-AS1
iHOPPGM5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:28 CET 2017

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