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PGM5P4-AS1 (PGM5P4 antisense RNA 1)

Identity

Alias_symbol (synonym)FAM233C
Other alias
HGNC (Hugo) PGM5P4-AS1
LocusID (NCBI) 103344932
Atlas_Id 71873
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 113528647 and ends at 113542690 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGM5P4-AS1   51195
Cards
Entrez_Gene (NCBI)PGM5P4-AS1  103344932  PGM5P4 antisense RNA 1
AliasesFAM233C
GeneCards (Weizmann)PGM5P4-AS1
Ensembl hg19 (Hinxton)ENSG00000231943 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231943 [Gene_View]  chr2:113528647-113542690 [Contig_View]  PGM5P4-AS1 [Vega]
ICGC DataPortalENSG00000231943
TCGA cBioPortalPGM5P4-AS1
AceView (NCBI)PGM5P4-AS1
Genatlas (Paris)PGM5P4-AS1
WikiGenes103344932
SOURCE (Princeton)PGM5P4-AS1
Genetics Home Reference (NIH)PGM5P4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PGM5P4-AS1  -     chr2:113528647-113542690 -  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGM5P4-AS1  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblPGM5P4-AS1 - 2q14.1 [CytoView hg19]  PGM5P4-AS1 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBIPGM5P4-AS1 [Mapview hg19]  PGM5P4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA995197 AY343891 CB266081 CF126671 CF127520
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGM5P4-AS1
Cluster EST : UnigeneHs.552787 [ NCBI ]
CGAP (NCI)Hs.552787
Alternative Splicing GalleryENSG00000231943
Gene ExpressionPGM5P4-AS1 [ NCBI-GEO ]   PGM5P4-AS1 [ EBI - ARRAY_EXPRESS ]   PGM5P4-AS1 [ SEEK ]   PGM5P4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PGM5P4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103344932
GTEX Portal (Tissue expression)PGM5P4-AS1
Human Protein AtlasENSG00000231943-PGM5P4-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PGM5P4-AS1
DMDM Disease mutations103344932
Blocks (Seattle)PGM5P4-AS1
Human Protein Atlas [tissue]ENSG00000231943-PGM5P4-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000231943
BioGRIDPGM5P4-AS1
STRING (EMBL)PGM5P4-AS1
ZODIACPGM5P4-AS1
Ontologies - Pathways
Huge Navigator PGM5P4-AS1 [HugePedia]
snp3D : Map Gene to Disease103344932
BioCentury BCIQPGM5P4-AS1
ClinGenPGM5P4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103344932
Clinical trialPGM5P4-AS1
Miscellaneous
canSAR (ICR)PGM5P4-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGM5P4-AS1
EVEXPGM5P4-AS1
GoPubMedPGM5P4-AS1
iHOPPGM5P4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:22:23 CET 2017

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