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PGM5P4 (phosphoglucomutase 5 pseudogene 4)

Identity

Other alias-
HGNC (Hugo) PGM5P4
LocusID (NCBI) 729468
Atlas_Id 79034
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 113539514 and ends at 113568938 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGM5P4   49605
Cards
Entrez_Gene (NCBI)PGM5P4  729468  phosphoglucomutase 5 pseudogene 4
Aliases
GeneCards (Weizmann)PGM5P4
Ensembl hg19 (Hinxton)ENSG00000225398 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225398 [Gene_View]  chr2:113539514-113568938 [Contig_View]  PGM5P4 [Vega]
ICGC DataPortalENSG00000225398
TCGA cBioPortalPGM5P4
AceView (NCBI)PGM5P4
Genatlas (Paris)PGM5P4
WikiGenes729468
SOURCE (Princeton)PGM5P4
Genetics Home Reference (NIH)PGM5P4
Genomic and cartography
GoldenPath hg38 (UCSC)PGM5P4  -     chr2:113539514-113568938 +  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGM5P4  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblPGM5P4 - 2q14.1 [CytoView hg19]  PGM5P4 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBIPGM5P4 [Mapview hg19]  PGM5P4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGM5P4
Alternative Splicing GalleryENSG00000225398
Gene ExpressionPGM5P4 [ NCBI-GEO ]   PGM5P4 [ EBI - ARRAY_EXPRESS ]   PGM5P4 [ SEEK ]   PGM5P4 [ MEM ]
Gene Expression Viewer (FireBrowse)PGM5P4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)729468
GTEX Portal (Tissue expression)PGM5P4
Human Protein AtlasENSG00000225398-PGM5P4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PGM5P4
DMDM Disease mutations729468
Blocks (Seattle)PGM5P4
Human Protein Atlas [tissue]ENSG00000225398-PGM5P4 [tissue]
Protein Interaction databases
FunCoupENSG00000225398
BioGRIDPGM5P4
STRING (EMBL)PGM5P4
ZODIACPGM5P4
Ontologies - Pathways
Huge Navigator PGM5P4 [HugePedia]
snp3D : Map Gene to Disease729468
BioCentury BCIQPGM5P4
ClinGenPGM5P4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729468
Clinical trialPGM5P4
Miscellaneous
canSAR (ICR)PGM5P4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGM5P4
EVEXPGM5P4
GoPubMedPGM5P4
iHOPPGM5P4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:00 CET 2017

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