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PGP (phosphoglycolate phosphatase)

Identity

Other aliasAUM
G3PP
PGPase
HGNC (Hugo) PGP
LocusID (NCBI) 283871
Atlas_Id 50713
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2211602 and ends at 2214821 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PGP (16p13.3) / AUTS2 (7q11.22)PGP (16p13.3) / CSNK1D (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGP   8909
Cards
Entrez_Gene (NCBI)PGP  283871  phosphoglycolate phosphatase
AliasesAUM; G3PP; PGPase
GeneCards (Weizmann)PGP
Ensembl hg19 (Hinxton)ENSG00000184207 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184207 [Gene_View]  chr16:2211602-2214821 [Contig_View]  PGP [Vega]
ICGC DataPortalENSG00000184207
TCGA cBioPortalPGP
AceView (NCBI)PGP
Genatlas (Paris)PGP
WikiGenes283871
SOURCE (Princeton)PGP
Genetics Home Reference (NIH)PGP
Genomic and cartography
GoldenPath hg38 (UCSC)PGP  -     chr16:2211602-2214821 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGP  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblPGP - 16p13.3 [CytoView hg19]  PGP - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIPGP [Mapview hg19]  PGP [Mapview hg38]
OMIM172280   
Gene and transcription
Genbank (Entrez)AK026146 AW161386 BC002330 BC035985 BC156305
RefSeq transcript (Entrez)NM_001042371
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGP
Cluster EST : UnigeneHs.442634 [ NCBI ]
CGAP (NCI)Hs.442634
Alternative Splicing GalleryENSG00000184207
Gene ExpressionPGP [ NCBI-GEO ]   PGP [ EBI - ARRAY_EXPRESS ]   PGP [ SEEK ]   PGP [ MEM ]
Gene Expression Viewer (FireBrowse)PGP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283871
GTEX Portal (Tissue expression)PGP
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDG6
Splice isoforms : SwissVarA6NDG6
PhosPhoSitePlusA6NDG6
Domains : Interpro (EBI)HAD-like_dom    HAD-SF_hydro_IIA    NPhePase-like_dom    PGP_euk   
Domain families : Pfam (Sanger)Hydrolase_6 (PF13344)   
Domain families : Pfam (NCBI)pfam13344   
Conserved Domain (NCBI)PGP
DMDM Disease mutations283871
Blocks (Seattle)PGP
SuperfamilyA6NDG6
Human Protein AtlasENSG00000184207
Peptide AtlasA6NDG6
IPIIPI00177008   
Protein Interaction databases
DIP (DOE-UCLA)A6NDG6
IntAct (EBI)A6NDG6
FunCoupENSG00000184207
BioGRIDPGP
STRING (EMBL)PGP
ZODIACPGP
Ontologies - Pathways
QuickGOA6NDG6
Ontology : AmiGOglycerol-1-phosphatase activity  magnesium ion binding  phosphoprotein phosphatase activity  protein tyrosine phosphatase activity  cytosol  glycerol biosynthetic process  glycerophospholipid metabolic process  phosphoglycolate phosphatase activity  dephosphorylation  peptidyl-tyrosine dephosphorylation  glycerol-3-phosphatase activity  negative regulation of gluconeogenesis  nucleotide phosphatase activity, acting on free nucleotides  nucleotide phosphatase activity, acting on free nucleotides  
Ontology : EGO-EBIglycerol-1-phosphatase activity  magnesium ion binding  phosphoprotein phosphatase activity  protein tyrosine phosphatase activity  cytosol  glycerol biosynthetic process  glycerophospholipid metabolic process  phosphoglycolate phosphatase activity  dephosphorylation  peptidyl-tyrosine dephosphorylation  glycerol-3-phosphatase activity  negative regulation of gluconeogenesis  nucleotide phosphatase activity, acting on free nucleotides  nucleotide phosphatase activity, acting on free nucleotides  
Pathways : KEGGGlyoxylate and dicarboxylate metabolism   
NDEx NetworkPGP
Atlas of Cancer Signalling NetworkPGP
Wikipedia pathwaysPGP
Orthology - Evolution
OrthoDB283871
GeneTree (enSembl)ENSG00000184207
Phylogenetic Trees/Animal Genes : TreeFamPGP
HOVERGENA6NDG6
HOGENOMA6NDG6
Homologs : HomoloGenePGP
Homology/Alignments : Family Browser (UCSC)PGP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGP
dbVarPGP
ClinVarPGP
1000_GenomesPGP 
Exome Variant ServerPGP
ExAC (Exome Aggregation Consortium)PGP (select the gene name)
Genetic variants : HAPMAP283871
Genomic Variants (DGV)PGP [DGVbeta]
DECIPHERPGP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGP 
Mutations
ICGC Data PortalPGP 
TCGA Data PortalPGP 
Broad Tumor PortalPGP
OASIS PortalPGP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PGP
DgiDB (Drug Gene Interaction Database)PGP
DoCM (Curated mutations)PGP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGP (select a term)
intoGenPGP
Cancer3DPGP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM172280   
Orphanet
MedgenPGP
Genetic Testing Registry PGP
NextProtA6NDG6 [Medical]
TSGene283871
GENETestsPGP
Huge Navigator PGP [HugePedia]
snp3D : Map Gene to Disease283871
BioCentury BCIQPGP
ClinGenPGP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283871
Chemical/Pharm GKB GenePA33246
Clinical trialPGP
Miscellaneous
canSAR (ICR)PGP (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGP
EVEXPGP
GoPubMedPGP
iHOPPGP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:30:58 CEST 2017

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