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PGPEP1L (pyroglutamyl-peptidase I-like)

Identity

Other alias-
HGNC (Hugo) PGPEP1L
LocusID (NCBI) 145814
Atlas_Id 71874
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 98968230 and ends at 99005656 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DENND5A (11p15.4) / PGPEP1L (15q26.3)GRID1 (10q23.1) / PGPEP1L (15q26.3)DENND5A PGPEP1L
GRID1 PGPEP1L

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGPEP1L   27080
Cards
Entrez_Gene (NCBI)PGPEP1L  145814  pyroglutamyl-peptidase I-like
Aliases
GeneCards (Weizmann)PGPEP1L
Ensembl hg19 (Hinxton)ENSG00000183571 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183571 [Gene_View]  chr15:98968230-99005656 [Contig_View]  PGPEP1L [Vega]
ICGC DataPortalENSG00000183571
TCGA cBioPortalPGPEP1L
AceView (NCBI)PGPEP1L
Genatlas (Paris)PGPEP1L
WikiGenes145814
SOURCE (Princeton)PGPEP1L
Genetics Home Reference (NIH)PGPEP1L
Genomic and cartography
GoldenPath hg38 (UCSC)PGPEP1L  -     chr15:98968230-99005656 -  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGPEP1L  -     15q26.3   [Description]    (hg19-Feb_2009)
EnsemblPGPEP1L - 15q26.3 [CytoView hg19]  PGPEP1L - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBIPGPEP1L [Mapview hg19]  PGPEP1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058162 BC104743 BC104744 BC105686
RefSeq transcript (Entrez)NM_001102612 NM_001167902
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGPEP1L
Cluster EST : UnigeneHs.592021 [ NCBI ]
CGAP (NCI)Hs.592021
Alternative Splicing GalleryENSG00000183571
Gene ExpressionPGPEP1L [ NCBI-GEO ]   PGPEP1L [ EBI - ARRAY_EXPRESS ]   PGPEP1L [ SEEK ]   PGPEP1L [ MEM ]
Gene Expression Viewer (FireBrowse)PGPEP1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145814
GTEX Portal (Tissue expression)PGPEP1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFU8
Splice isoforms : SwissVarA6NFU8
PhosPhoSitePlusA6NFU8
Domains : Interpro (EBI)Peptidase_C15-like   
Domain families : Pfam (Sanger)Peptidase_C15 (PF01470)   
Domain families : Pfam (NCBI)pfam01470   
Conserved Domain (NCBI)PGPEP1L
DMDM Disease mutations145814
Blocks (Seattle)PGPEP1L
SuperfamilyA6NFU8
Human Protein AtlasENSG00000183571
Peptide AtlasA6NFU8
IPIIPI00856095   IPI00954554   
Protein Interaction databases
DIP (DOE-UCLA)A6NFU8
IntAct (EBI)A6NFU8
FunCoupENSG00000183571
BioGRIDPGPEP1L
STRING (EMBL)PGPEP1L
ZODIACPGPEP1L
Ontologies - Pathways
QuickGOA6NFU8
Ontology : AmiGOcytosol  proteolysis  cysteine-type peptidase activity  
Ontology : EGO-EBIcytosol  proteolysis  cysteine-type peptidase activity  
NDEx NetworkPGPEP1L
Atlas of Cancer Signalling NetworkPGPEP1L
Wikipedia pathwaysPGPEP1L
Orthology - Evolution
OrthoDB145814
GeneTree (enSembl)ENSG00000183571
Phylogenetic Trees/Animal Genes : TreeFamPGPEP1L
HOVERGENA6NFU8
HOGENOMA6NFU8
Homologs : HomoloGenePGPEP1L
Homology/Alignments : Family Browser (UCSC)PGPEP1L
Gene fusions - Rearrangements
Fusion: TCGADENND5A PGPEP1L
Fusion: TCGAGRID1 PGPEP1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGPEP1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGPEP1L
dbVarPGPEP1L
ClinVarPGPEP1L
1000_GenomesPGPEP1L 
Exome Variant ServerPGPEP1L
ExAC (Exome Aggregation Consortium)PGPEP1L (select the gene name)
Genetic variants : HAPMAP145814
Genomic Variants (DGV)PGPEP1L [DGVbeta]
DECIPHERPGPEP1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGPEP1L 
Mutations
ICGC Data PortalPGPEP1L 
TCGA Data PortalPGPEP1L 
Broad Tumor PortalPGPEP1L
OASIS PortalPGPEP1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGPEP1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGPEP1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PGPEP1L
DgiDB (Drug Gene Interaction Database)PGPEP1L
DoCM (Curated mutations)PGPEP1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGPEP1L (select a term)
intoGenPGPEP1L
Cancer3DPGPEP1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPGPEP1L
Genetic Testing Registry PGPEP1L
NextProtA6NFU8 [Medical]
TSGene145814
GENETestsPGPEP1L
Target ValidationPGPEP1L
Huge Navigator PGPEP1L [HugePedia]
snp3D : Map Gene to Disease145814
BioCentury BCIQPGPEP1L
ClinGenPGPEP1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145814
Chemical/Pharm GKB GenePA165479208
Clinical trialPGPEP1L
Miscellaneous
canSAR (ICR)PGPEP1L (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGPEP1L
EVEXPGPEP1L
GoPubMedPGPEP1L
iHOPPGPEP1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:12 CEST 2017

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