Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PGR-AS1 (PGR antisense RNA 1)

Identity

Alias (NCBI)AT1
AT2
AT3
HGNC (Hugo) PGR-AS1
HGNC Alias symbAT1
AT2
AT3
HGNC Alias namePR-antisense-transcripts
LocusID (NCBI) 101054525
Atlas_Id 79083
Location 11q22.1  [Link to chromosome band 11q22]
Location_base_pair Starts at 101129077 and ends at 101159270 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PGR-AS1   52650
Cards
Entrez_Gene (NCBI)PGR-AS1    PGR antisense RNA 1
AliasesAT1; AT2; AT3
GeneCards (Weizmann)PGR-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr11:101129077-101159270 [Contig_View]  PGR-AS1 [Vega]
TCGA cBioPortalPGR-AS1
AceView (NCBI)PGR-AS1
Genatlas (Paris)PGR-AS1
SOURCE (Princeton)PGR-AS1
Genetics Home Reference (NIH)PGR-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PGR-AS1  -     chr11:101129077-101159270 +  11q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGR-AS1  -     11q22.1   [Description]    (hg19-Feb_2009)
GoldenPathPGR-AS1 - 11q22.1 [CytoView hg19]  PGR-AS1 - 11q22.1 [CytoView hg38]
genome Data Viewer NCBIPGR-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)FJ515872 FJ515873
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGR-AS1
Gene ExpressionPGR-AS1 [ NCBI-GEO ]   PGR-AS1 [ EBI - ARRAY_EXPRESS ]   PGR-AS1 [ SEEK ]   PGR-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PGR-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of PGR-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101054525
GTEX Portal (Tissue expression)PGR-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PGR-AS1
Blocks (Seattle)PGR-AS1
Protein Interaction databases
BioGRIDPGR-AS1
STRING (EMBL)PGR-AS1
ZODIACPGR-AS1
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGR-AS1
EVEXPGR-AS1
GoPubMedPGR-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:22:25 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.