Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PGR-AS1 (PGR antisense RNA 1)

Identity

Alias_symbol (synonym)AT1
AT2
AT3
Other alias
HGNC (Hugo) PGR-AS1
LocusID (NCBI) 101054525
Atlas_Id 79083
Location 11q22.1  [Link to chromosome band 11q22]
Location_base_pair Starts at 101129077 and ends at 101159270 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PGR-AS1   52650
Cards
Entrez_Gene (NCBI)PGR-AS1  101054525  PGR antisense RNA 1
AliasesAT1; AT2; AT3
GeneCards (Weizmann)PGR-AS1
Ensembl hg19 (Hinxton)ENSG00000282728 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000282728 [Gene_View]  chr11:101129077-101159270 [Contig_View]  PGR-AS1 [Vega]
ICGC DataPortalENSG00000282728
TCGA cBioPortalPGR-AS1
AceView (NCBI)PGR-AS1
Genatlas (Paris)PGR-AS1
WikiGenes101054525
SOURCE (Princeton)PGR-AS1
Genetics Home Reference (NIH)PGR-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PGR-AS1  -     chr11:101129077-101159270 +  11q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGR-AS1  -     11q22.1   [Description]    (hg19-Feb_2009)
EnsemblPGR-AS1 - 11q22.1 [CytoView hg19]  PGR-AS1 - 11q22.1 [CytoView hg38]
Mapping of homologs : NCBIPGR-AS1 [Mapview hg19]  PGR-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)FJ515872 FJ515873
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGR-AS1
Cluster EST : UnigeneHs.742403 [ NCBI ]
CGAP (NCI)Hs.742403
Alternative Splicing GalleryENSG00000282728
Gene ExpressionPGR-AS1 [ NCBI-GEO ]   PGR-AS1 [ EBI - ARRAY_EXPRESS ]   PGR-AS1 [ SEEK ]   PGR-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PGR-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101054525
GTEX Portal (Tissue expression)PGR-AS1
Human Protein AtlasENSG00000282728-PGR-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PGR-AS1
DMDM Disease mutations101054525
Blocks (Seattle)PGR-AS1
Human Protein Atlas [tissue]ENSG00000282728-PGR-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000282728
BioGRIDPGR-AS1
STRING (EMBL)PGR-AS1
ZODIACPGR-AS1
Ontologies - Pathways
Huge Navigator PGR-AS1 [HugePedia]
snp3D : Map Gene to Disease101054525
BioCentury BCIQPGR-AS1
ClinGenPGR-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101054525
Clinical trialPGR-AS1
Miscellaneous
canSAR (ICR)PGR-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGR-AS1
EVEXPGR-AS1
GoPubMedPGR-AS1
iHOPPGR-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:47:23 CET 2018
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