Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PGS1 (phosphatidylglycerophosphate synthase 1)

Identity

Alias_symbol (synonym)DKFZP762M186
Other alias-
HGNC (Hugo) PGS1
LocusID (NCBI) 9489
Atlas_Id 71875
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 78378618 and ends at 78424659 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PGS1 (17q25.3) / BIRC5 (17q25.3)PGS1 (17q25.3) / PGS1 (17q25.3)PGS1 (17q25.3) / ZZEF1 (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGS1   30029
Cards
Entrez_Gene (NCBI)PGS1  9489  phosphatidylglycerophosphate synthase 1
Aliases
GeneCards (Weizmann)PGS1
Ensembl hg19 (Hinxton)ENSG00000087157 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000087157 [Gene_View]  chr17:78378618-78424659 [Contig_View]  PGS1 [Vega]
ICGC DataPortalENSG00000087157
TCGA cBioPortalPGS1
AceView (NCBI)PGS1
Genatlas (Paris)PGS1
WikiGenes9489
SOURCE (Princeton)PGS1
Genetics Home Reference (NIH)PGS1
Genomic and cartography
GoldenPath hg38 (UCSC)PGS1  -     chr17:78378618-78424659 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PGS1  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblPGS1 - 17q25.3 [CytoView hg19]  PGS1 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIPGS1 [Mapview hg19]  PGS1 [Mapview hg38]
OMIM614942   
Gene and transcription
Genbank (Entrez)AK024529 AK225030 AK296882 AK297156 AK307874
RefSeq transcript (Entrez)NM_024419
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PGS1
Cluster EST : UnigeneHs.654671 [ NCBI ]
CGAP (NCI)Hs.654671
Alternative Splicing GalleryENSG00000087157
Gene ExpressionPGS1 [ NCBI-GEO ]   PGS1 [ EBI - ARRAY_EXPRESS ]   PGS1 [ SEEK ]   PGS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PGS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9489
GTEX Portal (Tissue expression)PGS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32NB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32NB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32NB8
Splice isoforms : SwissVarQ32NB8
Catalytic activity : Enzyme2.7.8.5 [ Enzyme-Expasy ]   2.7.8.52.7.8.5 [ IntEnz-EBI ]   2.7.8.5 [ BRENDA ]   2.7.8.5 [ KEGG ]   
PhosPhoSitePlusQ32NB8
Domaine pattern : Prosite (Expaxy)PLD (PS50035)   
Domains : Interpro (EBI)PLipase-D_PtdSer-synthase-type    PLipase_D/transphosphatidylase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PGS1
DMDM Disease mutations9489
Blocks (Seattle)PGS1
SuperfamilyQ32NB8
Human Protein AtlasENSG00000087157
Peptide AtlasQ32NB8
HPRD17841
IPIIPI00382740   IPI00217795   IPI00894152   IPI00894400   IPI01011780   IPI00165081   
Protein Interaction databases
DIP (DOE-UCLA)Q32NB8
IntAct (EBI)Q32NB8
FunCoupENSG00000087157
BioGRIDPGS1
STRING (EMBL)PGS1
ZODIACPGS1
Ontologies - Pathways
QuickGOQ32NB8
Ontology : AmiGOcalcium ion binding  ATP binding  mitochondrion  mitochondrial inner membrane  endoplasmic reticulum  phosphatidylglycerol biosynthetic process  CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity  cardiolipin biosynthetic process  diacylglycerol metabolic process  
Ontology : EGO-EBIcalcium ion binding  ATP binding  mitochondrion  mitochondrial inner membrane  endoplasmic reticulum  phosphatidylglycerol biosynthetic process  CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity  cardiolipin biosynthetic process  diacylglycerol metabolic process  
Pathways : KEGGGlycerophospholipid metabolism   
NDEx NetworkPGS1
Atlas of Cancer Signalling NetworkPGS1
Wikipedia pathwaysPGS1
Orthology - Evolution
OrthoDB9489
GeneTree (enSembl)ENSG00000087157
Phylogenetic Trees/Animal Genes : TreeFamPGS1
HOVERGENQ32NB8
HOGENOMQ32NB8
Homologs : HomoloGenePGS1
Homology/Alignments : Family Browser (UCSC)PGS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGS1
dbVarPGS1
ClinVarPGS1
1000_GenomesPGS1 
Exome Variant ServerPGS1
ExAC (Exome Aggregation Consortium)PGS1 (select the gene name)
Genetic variants : HAPMAP9489
Genomic Variants (DGV)PGS1 [DGVbeta]
DECIPHERPGS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPGS1 
Mutations
ICGC Data PortalPGS1 
TCGA Data PortalPGS1 
Broad Tumor PortalPGS1
OASIS PortalPGS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch PGS1
DgiDB (Drug Gene Interaction Database)PGS1
DoCM (Curated mutations)PGS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGS1 (select a term)
intoGenPGS1
Cancer3DPGS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614942   
Orphanet
MedgenPGS1
Genetic Testing Registry PGS1
NextProtQ32NB8 [Medical]
TSGene9489
GENETestsPGS1
Target ValidationPGS1
Huge Navigator PGS1 [HugePedia]
snp3D : Map Gene to Disease9489
BioCentury BCIQPGS1
ClinGenPGS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9489
Chemical/Pharm GKB GenePA142671180
Clinical trialPGS1
Miscellaneous
canSAR (ICR)PGS1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGS1
EVEXPGS1
GoPubMedPGS1
iHOPPGS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:27 CEST 2017

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