Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PHACTR2-AS1 (PHACTR2 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) PHACTR2-AS1
LocusID (NCBI) 285740
Atlas_Id 77946
Location 6q24.2  [Link to chromosome band 6q24]
Location_base_pair Starts at 143554115 and ends at 143569339 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHACTR2-AS1   40943
Cards
Entrez_Gene (NCBI)PHACTR2-AS1  285740  PHACTR2 antisense RNA 1
Aliases
GeneCards (Weizmann)PHACTR2-AS1
Ensembl hg19 (Hinxton)ENSG00000235740 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235740 [Gene_View]  ENSG00000235740 [Sequence]  chr6:143554115-143569339 [Contig_View]  PHACTR2-AS1 [Vega]
ICGC DataPortalENSG00000235740
TCGA cBioPortalPHACTR2-AS1
AceView (NCBI)PHACTR2-AS1
Genatlas (Paris)PHACTR2-AS1
WikiGenes285740
SOURCE (Princeton)PHACTR2-AS1
Genetics Home Reference (NIH)PHACTR2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PHACTR2-AS1  -     chr6:143554115-143569339 -  6q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHACTR2-AS1  -     6q24.2   [Description]    (hg19-Feb_2009)
EnsemblPHACTR2-AS1 - 6q24.2 [CytoView hg19]  PHACTR2-AS1 - 6q24.2 [CytoView hg38]
Mapping of homologs : NCBIPHACTR2-AS1 [Mapview hg19]  PHACTR2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA815385 AK093151 AK098520 BC033369 BC117438
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHACTR2-AS1
Cluster EST : UnigeneHs.432656 [ NCBI ]
CGAP (NCI)Hs.432656
Alternative Splicing GalleryENSG00000235740
Gene ExpressionPHACTR2-AS1 [ NCBI-GEO ]   PHACTR2-AS1 [ EBI - ARRAY_EXPRESS ]   PHACTR2-AS1 [ SEEK ]   PHACTR2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PHACTR2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285740
GTEX Portal (Tissue expression)PHACTR2-AS1
Human Protein AtlasENSG00000235740-PHACTR2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PHACTR2-AS1
DMDM Disease mutations285740
Blocks (Seattle)PHACTR2-AS1
Human Protein Atlas [tissue]ENSG00000235740-PHACTR2-AS1 [tissue]
IPIIPI00984471   
Protein Interaction databases
FunCoupENSG00000235740
BioGRIDPHACTR2-AS1
STRING (EMBL)PHACTR2-AS1
ZODIACPHACTR2-AS1
Ontologies - Pathways
Huge Navigator PHACTR2-AS1 [HugePedia]
snp3D : Map Gene to Disease285740
BioCentury BCIQPHACTR2-AS1
ClinGenPHACTR2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285740
Clinical trialPHACTR2-AS1
Miscellaneous
canSAR (ICR)PHACTR2-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHACTR2-AS1
EVEXPHACTR2-AS1
GoPubMedPHACTR2-AS1
iHOPPHACTR2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:23:46 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.