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PHAX (phosphorylated adaptor for RNA export)

Identity

Alias_namesRNUXA
RNA U, small nuclear RNA export adaptor (phosphorylation regulated)
Alias_symbol (synonym)FLJ13193
Other alias
HGNC (Hugo) PHAX
LocusID (NCBI) 51808
Atlas_Id 71877
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 125936607 and ends at 125962944 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM63B (15q21.3) / PHAX (5q23.2)PHAX (5q23.2) / PHAX (5q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHAX   10241
Cards
Entrez_Gene (NCBI)PHAX  51808  phosphorylated adaptor for RNA export
AliasesRNUXA
GeneCards (Weizmann)PHAX
Ensembl hg19 (Hinxton)ENSG00000164902 [Gene_View]  chr5:125936607-125962944 [Contig_View]  PHAX [Vega]
Ensembl hg38 (Hinxton)ENSG00000164902 [Gene_View]  chr5:125936607-125962944 [Contig_View]  PHAX [Vega]
ICGC DataPortalENSG00000164902
TCGA cBioPortalPHAX
AceView (NCBI)PHAX
Genatlas (Paris)PHAX
WikiGenes51808
SOURCE (Princeton)PHAX
Genetics Home Reference (NIH)PHAX
Genomic and cartography
GoldenPath hg19 (UCSC)PHAX  -     chr5:125936607-125962944 +  5q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PHAX  -     5q23.2   [Description]    (hg38-Dec_2013)
EnsemblPHAX - 5q23.2 [CytoView hg19]  PHAX - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBIPHAX [Mapview hg19]  PHAX [Mapview hg38]
OMIM604924   
Gene and transcription
Genbank (Entrez)AF086448 AK023255 AK024065 AK225464 AK298497
RefSeq transcript (Entrez)NM_032177
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)PHAX
Cluster EST : UnigeneHs.744042 [ NCBI ]
CGAP (NCI)Hs.744042
Alternative Splicing GalleryENSG00000164902
Gene ExpressionPHAX [ NCBI-GEO ]   PHAX [ EBI - ARRAY_EXPRESS ]   PHAX [ SEEK ]   PHAX [ MEM ]
Gene Expression Viewer (FireBrowse)PHAX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51808
GTEX Portal (Tissue expression)PHAX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H814   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H814  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H814
Splice isoforms : SwissVarQ9H814
PhosPhoSitePlusQ9H814
Domains : Interpro (EBI)PHAX_RNA-binding_domain   
Domain families : Pfam (Sanger)RNA_GG_bind (PF10258)   
Domain families : Pfam (NCBI)pfam10258   
Conserved Domain (NCBI)PHAX
DMDM Disease mutations51808
Blocks (Seattle)PHAX
PDB (SRS)2XC7   
PDB (PDBSum)2XC7   
PDB (IMB)2XC7   
PDB (RSDB)2XC7   
Structural Biology KnowledgeBase2XC7   
SCOP (Structural Classification of Proteins)2XC7   
CATH (Classification of proteins structures)2XC7   
SuperfamilyQ9H814
Human Protein AtlasENSG00000164902
Peptide AtlasQ9H814
HPRD15122
IPIIPI00303402   IPI00908829   
Protein Interaction databases
DIP (DOE-UCLA)Q9H814
IntAct (EBI)Q9H814
FunCoupENSG00000164902
BioGRIDPHAX
STRING (EMBL)PHAX
ZODIACPHAX
Ontologies - Pathways
QuickGOQ9H814
Ontology : AmiGOspliceosomal snRNP assembly  RNA binding  nucleus  nucleoplasm  nucleoplasm  nucleolus  cytosol  snRNA export from nucleus  gene expression  Cajal body  protein transport  toxic substance binding  ncRNA metabolic process  neuronal cell body  intracellular membrane-bounded organelle  
Ontology : EGO-EBIspliceosomal snRNP assembly  RNA binding  nucleus  nucleoplasm  nucleoplasm  nucleolus  cytosol  snRNA export from nucleus  gene expression  Cajal body  protein transport  toxic substance binding  ncRNA metabolic process  neuronal cell body  intracellular membrane-bounded organelle  
Pathways : KEGGRNA transport   
NDEx NetworkPHAX
Atlas of Cancer Signalling NetworkPHAX
Wikipedia pathwaysPHAX
Orthology - Evolution
OrthoDB51808
GeneTree (enSembl)ENSG00000164902
Phylogenetic Trees/Animal Genes : TreeFamPHAX
HOVERGENQ9H814
HOGENOMQ9H814
Homologs : HomoloGenePHAX
Homology/Alignments : Family Browser (UCSC)PHAX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHAX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHAX
dbVarPHAX
ClinVarPHAX
1000_GenomesPHAX 
Exome Variant ServerPHAX
ExAC (Exome Aggregation Consortium)PHAX (select the gene name)
Genetic variants : HAPMAP51808
Genomic Variants (DGV)PHAX [DGVbeta]
DECIPHER (Syndromes)5:125936607-125962944  ENSG00000164902
CONAN: Copy Number AnalysisPHAX 
Mutations
ICGC Data PortalPHAX 
TCGA Data PortalPHAX 
Broad Tumor PortalPHAX
OASIS PortalPHAX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHAX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHAX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHAX
DgiDB (Drug Gene Interaction Database)PHAX
DoCM (Curated mutations)PHAX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHAX (select a term)
intoGenPHAX
Cancer3DPHAX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604924   
Orphanet
MedgenPHAX
Genetic Testing Registry PHAX
NextProtQ9H814 [Medical]
TSGene51808
GENETestsPHAX
Huge Navigator PHAX [HugePedia]
snp3D : Map Gene to Disease51808
BioCentury BCIQPHAX
ClinGenPHAX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51808
Chemical/Pharm GKB GenePA164724444
Clinical trialPHAX
Miscellaneous
canSAR (ICR)PHAX (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHAX
EVEXPHAX
GoPubMedPHAX
iHOPPHAX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:30 CET 2017

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