PHF1 (PHD finger protein 1)

Identity

Other names	PCL1
	PHF2
Hugo	PHF1
Location	6p21.3
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

Breakpoints

External links

	Nomenclature
Hugo	PHF1
GDB	PHF1
Entrez_Gene	PHF1  5252  PHD finger protein 1
	Cards
GeneCards	PHF1
Ensembl	PHF1 [Search_View]   ENSG00000112511 [Gene_View]
Genatlas	PHF1
GeneLynx	PHF1
eGenome	PHF1
euGene	5252
	Genomic and cartography
GoldenPath	PHF1  -  6p21.3   chr6:33486772-33492191 +  6p21.32   [Description]    (hg18-March_2006)
Ensembl	PHF1 - 6p21.32 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	PHF1
	Gene and transcription
Genbank	AF029678 [ ENTREZ ]
Genbank	AF052205 [ ENTREZ ]
Genbank	AK225913 [ ENTREZ ]
Genbank	BC008834 [ ENTREZ ]
Genbank	DQ896419 [ ENTREZ ]
RefSeq	NM_002636 [ SRS ]    NM_002636 [ ENTREZ ]
RefSeq	NM_024165 [ SRS ]    NM_024165 [ ENTREZ ]
RefSeq	AC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeq	AC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeq	NC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeq	NT_007592 [ SRS ]    NT_007592 [ ENTREZ ]
RefSeq	NW_001838980 [ SRS ]    NW_001838980 [ ENTREZ ]
RefSeq	NW_923073 [ SRS ]    NW_923073 [ ENTREZ ]
AceView	PHF1 AceView - NCBI
Unigene	Hs.166204 [ SRS ]    Hs.166204 [ NCBI ]     HS166204 [ spliceNest ]
Fast-db	7610 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O43189 [ SRS]    O43189 [ EXPASY ]     O43189 [ INTERPRO ]
Prosite	PS01359 ZF_PHD_1 [ SRS ]    PS01359 ZF_PHD_1 [ Expasy ]
Prosite	PS50016 ZF_PHD_2 [ SRS ]    PS50016 ZF_PHD_2 [ Expasy ]
Interpro	IPR002999 Tudor [ SRS ]    IPR002999 Tudor [ EBI ]
Interpro	IPR001965 Znf_PHD [ SRS ]    IPR001965 Znf_PHD [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	O43189
Pfam	PF00628 PHD [ SRS ]    PF00628 PHD [ Sanger ]    pfam00628 [ NCBI-CDD ]
Smart	SM00249 PHD [EMBL]
Smart	SM00333 TUDOR [EMBL]
Blocks	O43189
PDB	PHF1 [ SRS ]    PHF1 [ PdbSum ],   PHF1 [ IMB ]   PHF1 [ RSDB ]
HPRD	04195
	Protein Interaction databases
DIP	O43189
IntAct	O43189
	Polymorphism : SNP, mutations, diseases
OMIM	602881    [ map ]
GENECLINICS	602881
SNP	PHF1 [dbSNP-NCBI]
SNP	NM_002636 [SNP-NCI]
SNP	NM_024165 [SNP-NCI]
SNP	PHF1 [GeneSNPs - Utah]  PHF1] [HGBASE - SRS]
HAPMAP	PHF1 [HAPMAP]
COSMIC	PHF1 [Somatic mutation (COSMIC-CGP-Sanger)]
TICdb	nucleic [Translocation breakpoints In Cancer]
HGMD	PHF1
	General knowledge
Family Browser	PHF1 [UCSC Family Browser]
SOURCE	NM_002636
SOURCE	NM_024165
SMD	Hs.166204
SAGE	Hs.166204
GO	nucleic acid binding [Amigo]  nucleic acid binding
GO	transcription factor activity [Amigo]  transcription factor activity
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	zinc ion binding [Amigo]  zinc ion binding
GO	metal ion binding [Amigo]  metal ion binding
PubGene	PHF1
TreeFam	PHF1
CTD	5252 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PHF1 Related clones (RZPD - Berlin)
	PubMed
PubMed	11 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Jul 14 17:20:30 2008