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PHF10 (PHD finger protein 10)

Identity

Alias_symbol (synonym)FLJ10975
XAP135
BAF45a
Other aliasBAF45A
HGNC (Hugo) PHF10
LocusID (NCBI) 55274
Atlas_Id 51693
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 169703906 and ends at 169724010 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHF10   18250
Cards
Entrez_Gene (NCBI)PHF10  55274  PHD finger protein 10
AliasesBAF45A; XAP135
GeneCards (Weizmann)PHF10
Ensembl hg19 (Hinxton)ENSG00000130024 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130024 [Gene_View]  ENSG00000130024 [Sequence]  chr6:169703906-169724010 [Contig_View]  PHF10 [Vega]
ICGC DataPortalENSG00000130024
TCGA cBioPortalPHF10
AceView (NCBI)PHF10
Genatlas (Paris)PHF10
WikiGenes55274
SOURCE (Princeton)PHF10
Genetics Home Reference (NIH)PHF10
Genomic and cartography
GoldenPath hg38 (UCSC)PHF10  -     chr6:169703906-169724010 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF10  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblPHF10 - 6q27 [CytoView hg19]  PHF10 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIPHF10 [Mapview hg19]  PHF10 [Mapview hg38]
OMIM613069   
Gene and transcription
Genbank (Entrez)AJ420510 AK001837 AK222612 AK296349 AL133094
RefSeq transcript (Entrez)NM_018288 NM_133325
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHF10
Cluster EST : UnigeneHs.435933 [ NCBI ]
CGAP (NCI)Hs.435933
Alternative Splicing GalleryENSG00000130024
Gene ExpressionPHF10 [ NCBI-GEO ]   PHF10 [ EBI - ARRAY_EXPRESS ]   PHF10 [ SEEK ]   PHF10 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55274
GTEX Portal (Tissue expression)PHF10
Human Protein AtlasENSG00000130024-PHF10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUB8
Splice isoforms : SwissVarQ8WUB8
PhosPhoSitePlusQ8WUB8
Domaine pattern : Prosite (Expaxy)ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PHD (PF00628)   
Domain families : Pfam (NCBI)pfam00628   
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)PHF10
DMDM Disease mutations55274
Blocks (Seattle)PHF10
SuperfamilyQ8WUB8
Human Protein Atlas [tissue]ENSG00000130024-PHF10 [tissue]
Peptide AtlasQ8WUB8
HPRD11428
IPIIPI00940864   IPI00941847   IPI00964464   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUB8
IntAct (EBI)Q8WUB8
FunCoupENSG00000130024
BioGRIDPHF10
STRING (EMBL)PHF10
ZODIACPHF10
Ontologies - Pathways
QuickGOQ8WUB8
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  nervous system development  metal ion binding  npBAF complex  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  nervous system development  metal ion binding  npBAF complex  
NDEx NetworkPHF10
Atlas of Cancer Signalling NetworkPHF10
Wikipedia pathwaysPHF10
Orthology - Evolution
OrthoDB55274
GeneTree (enSembl)ENSG00000130024
Phylogenetic Trees/Animal Genes : TreeFamPHF10
HOVERGENQ8WUB8
HOGENOMQ8WUB8
Homologs : HomoloGenePHF10
Homology/Alignments : Family Browser (UCSC)PHF10
Gene fusions - Rearrangements
Fusion : QuiverPHF10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF10
dbVarPHF10
ClinVarPHF10
1000_GenomesPHF10 
Exome Variant ServerPHF10
ExAC (Exome Aggregation Consortium)ENSG00000130024
GNOMAD BrowserENSG00000130024
Genetic variants : HAPMAP55274
Genomic Variants (DGV)PHF10 [DGVbeta]
DECIPHERPHF10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF10 
Mutations
ICGC Data PortalPHF10 
TCGA Data PortalPHF10 
Broad Tumor PortalPHF10
OASIS PortalPHF10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHF10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHF10
DgiDB (Drug Gene Interaction Database)PHF10
DoCM (Curated mutations)PHF10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF10 (select a term)
intoGenPHF10
Cancer3DPHF10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613069   
Orphanet
DisGeNETPHF10
MedgenPHF10
Genetic Testing Registry PHF10
NextProtQ8WUB8 [Medical]
TSGene55274
GENETestsPHF10
Target ValidationPHF10
Huge Navigator PHF10 [HugePedia]
snp3D : Map Gene to Disease55274
BioCentury BCIQPHF10
ClinGenPHF10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55274
Chemical/Pharm GKB GenePA134972675
Clinical trialPHF10
Miscellaneous
canSAR (ICR)PHF10 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF10
EVEXPHF10
GoPubMedPHF10
iHOPPHF10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:42:48 CEST 2018

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