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PHF13 (PHD finger protein 13)

Identity

Alias_symbol (synonym)MGC43399
Other aliasPHF5
SPOC1
HGNC (Hugo) PHF13
LocusID (NCBI) 148479
Atlas_Id 71882
Location 1p36.31  [Link to chromosome band 1p36]
Location_base_pair Starts at 6613696 and ends at 6624033 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAND1 (12q14.3) / PHF13 (1p36.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHF13   22983
Cards
Entrez_Gene (NCBI)PHF13  148479  PHD finger protein 13
AliasesPHF5; SPOC1
GeneCards (Weizmann)PHF13
Ensembl hg19 (Hinxton)ENSG00000116273 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116273 [Gene_View]  chr1:6613696-6624033 [Contig_View]  PHF13 [Vega]
ICGC DataPortalENSG00000116273
TCGA cBioPortalPHF13
AceView (NCBI)PHF13
Genatlas (Paris)PHF13
WikiGenes148479
SOURCE (Princeton)PHF13
Genetics Home Reference (NIH)PHF13
Genomic and cartography
GoldenPath hg38 (UCSC)PHF13  -     chr1:6613696-6624033 +  1p36.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF13  -     1p36.31   [Description]    (hg19-Feb_2009)
EnsemblPHF13 - 1p36.31 [CytoView hg19]  PHF13 - 1p36.31 [CytoView hg38]
Mapping of homologs : NCBIPHF13 [Mapview hg19]  PHF13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209544 AK027492 AK097715 AK315110 AL121733
RefSeq transcript (Entrez)NM_153812
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHF13
Cluster EST : UnigeneHs.516079 [ NCBI ]
CGAP (NCI)Hs.516079
Alternative Splicing GalleryENSG00000116273
Gene ExpressionPHF13 [ NCBI-GEO ]   PHF13 [ EBI - ARRAY_EXPRESS ]   PHF13 [ SEEK ]   PHF13 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148479
GTEX Portal (Tissue expression)PHF13
Human Protein AtlasENSG00000116273-PHF13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YI8
Splice isoforms : SwissVarQ86YI8
PhosPhoSitePlusQ86YI8
Domains : Interpro (EBI)Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PHD (PF00628)   
Domain families : Pfam (NCBI)pfam00628   
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)PHF13
DMDM Disease mutations148479
Blocks (Seattle)PHF13
PDB (SRS)3O70    3O7A   
PDB (PDBSum)3O70    3O7A   
PDB (IMB)3O70    3O7A   
PDB (RSDB)3O70    3O7A   
Structural Biology KnowledgeBase3O70    3O7A   
SCOP (Structural Classification of Proteins)3O70    3O7A   
CATH (Classification of proteins structures)3O70    3O7A   
SuperfamilyQ86YI8
Human Protein Atlas [tissue]ENSG00000116273-PHF13 [tissue]
Peptide AtlasQ86YI8
HPRD10150
IPIIPI00171309   
Protein Interaction databases
DIP (DOE-UCLA)Q86YI8
IntAct (EBI)Q86YI8
FunCoupENSG00000116273
BioGRIDPHF13
STRING (EMBL)PHF13
ZODIACPHF13
Ontologies - Pathways
QuickGOQ86YI8
Ontology : AmiGOmitotic cell cycle  chromatin binding  nucleus  nucleoplasm  chromosome segregation  mitotic chromosome condensation  zinc ion binding  covalent chromatin modification  methylated histone binding  cell division  
Ontology : EGO-EBImitotic cell cycle  chromatin binding  nucleus  nucleoplasm  chromosome segregation  mitotic chromosome condensation  zinc ion binding  covalent chromatin modification  methylated histone binding  cell division  
NDEx NetworkPHF13
Atlas of Cancer Signalling NetworkPHF13
Wikipedia pathwaysPHF13
Orthology - Evolution
OrthoDB148479
GeneTree (enSembl)ENSG00000116273
Phylogenetic Trees/Animal Genes : TreeFamPHF13
HOVERGENQ86YI8
HOGENOMQ86YI8
Homologs : HomoloGenePHF13
Homology/Alignments : Family Browser (UCSC)PHF13
Gene fusions - Rearrangements
Tumor Fusion PortalPHF13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF13
dbVarPHF13
ClinVarPHF13
1000_GenomesPHF13 
Exome Variant ServerPHF13
ExAC (Exome Aggregation Consortium)ENSG00000116273
GNOMAD BrowserENSG00000116273
Genetic variants : HAPMAP148479
Genomic Variants (DGV)PHF13 [DGVbeta]
DECIPHERPHF13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF13 
Mutations
ICGC Data PortalPHF13 
TCGA Data PortalPHF13 
Broad Tumor PortalPHF13
OASIS PortalPHF13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHF13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHF13
DgiDB (Drug Gene Interaction Database)PHF13
DoCM (Curated mutations)PHF13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF13 (select a term)
intoGenPHF13
Cancer3DPHF13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPHF13
MedgenPHF13
Genetic Testing Registry PHF13
NextProtQ86YI8 [Medical]
TSGene148479
GENETestsPHF13
Target ValidationPHF13
Huge Navigator PHF13 [HugePedia]
snp3D : Map Gene to Disease148479
BioCentury BCIQPHF13
ClinGenPHF13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148479
Chemical/Pharm GKB GenePA134901883
Clinical trialPHF13
Miscellaneous
canSAR (ICR)PHF13 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF13
EVEXPHF13
GoPubMedPHF13
iHOPPHF13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:07:01 CET 2017

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