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PHF14 (PHD finger protein 14)

Identity

Alias_symbol (synonym)KIAA0783
Other alias-
HGNC (Hugo) PHF14
LocusID (NCBI) 9678
Atlas_Id 46736
Location 7p21.3  [Link to chromosome band 7p21]
Location_base_pair Starts at 10973872 and ends at 11107749 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDH18 (5p14.3) / PHF14 (7p21.3)MACF1 (1p34.3) / PHF14 (7p21.3)PHF14 (7p21.3) / CACNA2D1 (7q21.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHF14   22203
Cards
Entrez_Gene (NCBI)PHF14  9678  PHD finger protein 14
Aliases
GeneCards (Weizmann)PHF14
Ensembl hg19 (Hinxton)ENSG00000106443 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106443 [Gene_View]  chr7:10973872-11107749 [Contig_View]  PHF14 [Vega]
ICGC DataPortalENSG00000106443
TCGA cBioPortalPHF14
AceView (NCBI)PHF14
Genatlas (Paris)PHF14
WikiGenes9678
SOURCE (Princeton)PHF14
Genetics Home Reference (NIH)PHF14
Genomic and cartography
GoldenPath hg38 (UCSC)PHF14  -     chr7:10973872-11107749 +  7p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF14  -     7p21.3   [Description]    (hg19-Feb_2009)
EnsemblPHF14 - 7p21.3 [CytoView hg19]  PHF14 - 7p21.3 [CytoView hg38]
Mapping of homologs : NCBIPHF14 [Mapview hg19]  PHF14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA699404 AA837024 AB018326 AK123522 AK294419
RefSeq transcript (Entrez)NM_001007157 NM_014660
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHF14
Cluster EST : UnigeneHs.655688 [ NCBI ]
CGAP (NCI)Hs.655688
Alternative Splicing GalleryENSG00000106443
Gene ExpressionPHF14 [ NCBI-GEO ]   PHF14 [ EBI - ARRAY_EXPRESS ]   PHF14 [ SEEK ]   PHF14 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9678
GTEX Portal (Tissue expression)PHF14
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94880   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94880  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94880
Splice isoforms : SwissVarO94880
PhosPhoSitePlusO94880
Domaine pattern : Prosite (Expaxy)EPHD (PS51805)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PHD (PF00628)   
Domain families : Pfam (NCBI)pfam00628   
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)PHF14
DMDM Disease mutations9678
Blocks (Seattle)PHF14
SuperfamilyO94880
Human Protein AtlasENSG00000106443
Peptide AtlasO94880
HPRD17845
IPIIPI00941211   IPI00472782   IPI00973238   
Protein Interaction databases
DIP (DOE-UCLA)O94880
IntAct (EBI)O94880
FunCoupENSG00000106443
BioGRIDPHF14
STRING (EMBL)PHF14
ZODIACPHF14
Ontologies - Pathways
QuickGOO94880
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nucleus  zinc ion binding  lung alveolus development  negative regulation of platelet-derived growth factor receptor-alpha signaling pathway  negative regulation of mesenchymal cell proliferation involved in lung development  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nucleus  zinc ion binding  lung alveolus development  negative regulation of platelet-derived growth factor receptor-alpha signaling pathway  negative regulation of mesenchymal cell proliferation involved in lung development  
NDEx NetworkPHF14
Atlas of Cancer Signalling NetworkPHF14
Wikipedia pathwaysPHF14
Orthology - Evolution
OrthoDB9678
GeneTree (enSembl)ENSG00000106443
Phylogenetic Trees/Animal Genes : TreeFamPHF14
HOVERGENO94880
HOGENOMO94880
Homologs : HomoloGenePHF14
Homology/Alignments : Family Browser (UCSC)PHF14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF14
dbVarPHF14
ClinVarPHF14
1000_GenomesPHF14 
Exome Variant ServerPHF14
ExAC (Exome Aggregation Consortium)PHF14 (select the gene name)
Genetic variants : HAPMAP9678
Genomic Variants (DGV)PHF14 [DGVbeta]
DECIPHERPHF14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF14 
Mutations
ICGC Data PortalPHF14 
TCGA Data PortalPHF14 
Broad Tumor PortalPHF14
OASIS PortalPHF14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHF14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHF14
DgiDB (Drug Gene Interaction Database)PHF14
DoCM (Curated mutations)PHF14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF14 (select a term)
intoGenPHF14
Cancer3DPHF14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPHF14
Genetic Testing Registry PHF14
NextProtO94880 [Medical]
TSGene9678
GENETestsPHF14
Target ValidationPHF14
Huge Navigator PHF14 [HugePedia]
snp3D : Map Gene to Disease9678
BioCentury BCIQPHF14
ClinGenPHF14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9678
Chemical/Pharm GKB GenePA134867397
Clinical trialPHF14
Miscellaneous
canSAR (ICR)PHF14 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF14
EVEXPHF14
GoPubMedPHF14
iHOPPHF14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:49:17 CEST 2017

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