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PHF19 (PHD finger protein 19)

Identity

Alias_symbol (synonym)DKFZP727G051
PCL3
MTF2L1
TDRD19B
Other alias
HGNC (Hugo) PHF19
LocusID (NCBI) 26147
Atlas_Id 46423
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 120869573 and ends at 120877328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HIRA (22q11.21) / PHF19 (9q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHF19   24566
Cards
Entrez_Gene (NCBI)PHF19  26147  PHD finger protein 19
AliasesMTF2L1; PCL3; TDRD19B
GeneCards (Weizmann)PHF19
Ensembl hg19 (Hinxton)ENSG00000119403 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119403 [Gene_View]  chr9:120869573-120877328 [Contig_View]  PHF19 [Vega]
ICGC DataPortalENSG00000119403
TCGA cBioPortalPHF19
AceView (NCBI)PHF19
Genatlas (Paris)PHF19
WikiGenes26147
SOURCE (Princeton)PHF19
Genetics Home Reference (NIH)PHF19
Genomic and cartography
GoldenPath hg38 (UCSC)PHF19  -     chr9:120869573-120877328 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF19  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblPHF19 - 9q33.2 [CytoView hg19]  PHF19 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIPHF19 [Mapview hg19]  PHF19 [Mapview hg38]
OMIM609740   
Gene and transcription
Genbank (Entrez)AA743545 AI193743 AI369987 AK122744 AK302996
RefSeq transcript (Entrez)NM_001009936 NM_001286840 NM_001286842 NM_001286843 NM_015651
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHF19
Cluster EST : UnigeneHs.460124 [ NCBI ]
CGAP (NCI)Hs.460124
Alternative Splicing GalleryENSG00000119403
Gene ExpressionPHF19 [ NCBI-GEO ]   PHF19 [ EBI - ARRAY_EXPRESS ]   PHF19 [ SEEK ]   PHF19 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26147
GTEX Portal (Tissue expression)PHF19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T6S3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T6S3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T6S3
Splice isoforms : SwissVarQ5T6S3
PhosPhoSitePlusQ5T6S3
Domaine pattern : Prosite (Expaxy)ZF_PHD_1 (PS01359)   
Domains : Interpro (EBI)Mtf2_C_dom    Tudor    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Mtf2_C (PF14061)    PHD (PF00628)   
Domain families : Pfam (NCBI)pfam14061    pfam00628   
Domain families : Smart (EMBL)PHD (SM00249)  TUDOR (SM00333)  
Conserved Domain (NCBI)PHF19
DMDM Disease mutations26147
Blocks (Seattle)PHF19
PDB (SRS)2E5Q    4BD3   
PDB (PDBSum)2E5Q    4BD3   
PDB (IMB)2E5Q    4BD3   
PDB (RSDB)2E5Q    4BD3   
Structural Biology KnowledgeBase2E5Q    4BD3   
SCOP (Structural Classification of Proteins)2E5Q    4BD3   
CATH (Classification of proteins structures)2E5Q    4BD3   
SuperfamilyQ5T6S3
Human Protein AtlasENSG00000119403
Peptide AtlasQ5T6S3
HPRD17846
IPIIPI00152220   IPI00743344   IPI00879928   IPI00877885   IPI00157837   IPI00880080   
Protein Interaction databases
DIP (DOE-UCLA)Q5T6S3
IntAct (EBI)Q5T6S3
FunCoupENSG00000119403
BioGRIDPHF19
STRING (EMBL)PHF19
ZODIACPHF19
Ontologies - Pathways
QuickGOQ5T6S3
Ontology : AmiGOprotein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  covalent chromatin modification  methylated histone binding  ESC/E(Z) complex  negative regulation of gene expression, epigenetic  positive regulation of histone H3-K27 methylation  
Ontology : EGO-EBIprotein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  covalent chromatin modification  methylated histone binding  ESC/E(Z) complex  negative regulation of gene expression, epigenetic  positive regulation of histone H3-K27 methylation  
NDEx NetworkPHF19
Atlas of Cancer Signalling NetworkPHF19
Wikipedia pathwaysPHF19
Orthology - Evolution
OrthoDB26147
GeneTree (enSembl)ENSG00000119403
Phylogenetic Trees/Animal Genes : TreeFamPHF19
HOVERGENQ5T6S3
HOGENOMQ5T6S3
Homologs : HomoloGenePHF19
Homology/Alignments : Family Browser (UCSC)PHF19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF19
dbVarPHF19
ClinVarPHF19
1000_GenomesPHF19 
Exome Variant ServerPHF19
ExAC (Exome Aggregation Consortium)PHF19 (select the gene name)
Genetic variants : HAPMAP26147
Genomic Variants (DGV)PHF19 [DGVbeta]
DECIPHERPHF19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF19 
Mutations
ICGC Data PortalPHF19 
TCGA Data PortalPHF19 
Broad Tumor PortalPHF19
OASIS PortalPHF19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHF19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHF19
DgiDB (Drug Gene Interaction Database)PHF19
DoCM (Curated mutations)PHF19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF19 (select a term)
intoGenPHF19
Cancer3DPHF19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609740   
Orphanet
MedgenPHF19
Genetic Testing Registry PHF19
NextProtQ5T6S3 [Medical]
TSGene26147
GENETestsPHF19
Target ValidationPHF19
Huge Navigator PHF19 [HugePedia]
snp3D : Map Gene to Disease26147
BioCentury BCIQPHF19
ClinGenPHF19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26147
Chemical/Pharm GKB GenePA134911501
Clinical trialPHF19
Miscellaneous
canSAR (ICR)PHF19 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF19
EVEXPHF19
GoPubMedPHF19
iHOPPHF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:49:17 CEST 2017

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