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PHF20 (PHD finger protein 20)

Identity

Alias (NCBI)C20orf104
GLEA2
HCA58
NZF
TDRD20A
TZP
HGNC (Hugo) PHF20
HGNC Alias symbdJ1121G12.1
TDRD20A
HGNC Alias nametudor domain containing 20A
HGNC Previous nameC20orf104
HGNC Previous namechromosome 20 open reading frame 104
LocusID (NCBI) 51230
Atlas_Id 51408
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 35772015 and ends at 35950370 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C3orf70 (3q27.2) / PHF20 (20q11.22)CDK16 (Xp11.23) / PHF20 (20q11.22)EPB41L1 (20q11.23) / PHF20 (20q11.22)
GRIA3 (Xq25) / PHF20 (20q11.22)PHF20 (20q11.22) / ADNP (20q13.13)PHF20 (20q11.22) / DYNLRB1 (20q11.22)
PHF20 (20q11.22) / RBM39 (20q11.22)PHF20 (20q11.22) / RPN2 (20q11.23)PHF20 (20q11.22) / TP73-AS1 (1p36.32)
RPL38 (17q25.1) / PHF20 (20q11.22)UQCC1 (20q11.22) / PHF20 (20q11.22)EPB41L1 20q11.23 / PHF20 20q11.22
PHF20 20q11.22 / ADNP 20q13.13PHF20 20q11.22 / DYNLRB1 20q11.22PHF20 20q11.22 / RPN2 20q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PHF20   16098
Cards
Entrez_Gene (NCBI)PHF20    PHD finger protein 20
AliasesC20orf104; GLEA2; HCA58; NZF; 
TDRD20A; TZP
GeneCards (Weizmann)PHF20
Ensembl hg19 (Hinxton)ENSG00000025293 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000025293 [Gene_View]  ENSG00000025293 [Sequence]  chr20:35772015-35950370 [Contig_View]  PHF20 [Vega]
ICGC DataPortalENSG00000025293
TCGA cBioPortalPHF20
AceView (NCBI)PHF20
Genatlas (Paris)PHF20
SOURCE (Princeton)PHF20
Genetics Home Reference (NIH)PHF20
Genomic and cartography
GoldenPath hg38 (UCSC)PHF20  -     chr20:35772015-35950370 +  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF20  -     20q11.22   [Description]    (hg19-Feb_2009)
GoldenPathPHF20 - 20q11.22 [CytoView hg19]  PHF20 - 20q11.22 [CytoView hg38]
ImmunoBaseENSG00000025293
Genome Data Viewer NCBIPHF20 [Mapview hg19]  
OMIM610335   
Gene and transcription
Genbank (Entrez)AF220416 AF258787 AF348207 AK054597 AK090798
RefSeq transcript (Entrez)NM_016436
Consensus coding sequences : CCDS (NCBI)PHF20
Gene ExpressionPHF20 [ NCBI-GEO ]   PHF20 [ EBI - ARRAY_EXPRESS ]   PHF20 [ SEEK ]   PHF20 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF20 [ Firebrowse - Broad ]
GenevisibleExpression of PHF20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51230
GTEX Portal (Tissue expression)PHF20
Human Protein AtlasENSG00000025293-PHF20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PHF20
Human Protein Atlas [tissue]ENSG00000025293-PHF20 [tissue]
HPRD08514
Protein Interaction databases
BioGRIDPHF20
STRING (EMBL)PHF20
ZODIACPHF20
Ontologies - Pathways
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPHF20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:25:08 CEST 2021

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