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PHF20L1 (PHD finger protein 20-like 1)

Identity

Alias_symbol (synonym)CGI-72
FLJ13649
MGC64923
FLJ21615
TDRD20B
Other aliasURLC1
HGNC (Hugo) PHF20L1
LocusID (NCBI) 51105
Atlas_Id 53032
Location 8q24.22  [Link to chromosome band 8q24]
Location_base_pair Starts at 132775358 and ends at 132848807 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PHF20L1 (8q24.22) / PGA3 (11q12.2)PHF20L1 (8q24.22) / RAD51AP1 (12p13.32)PHF20L1 (8q24.22) / SAMD12 (8q24.12)
SAMD12 (8q24.12) / PHF20L1 (8q24.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHF20L1   24280
Cards
Entrez_Gene (NCBI)PHF20L1  51105  PHD finger protein 20-like 1
AliasesCGI-72; TDRD20B; URLC1
GeneCards (Weizmann)PHF20L1
Ensembl hg19 (Hinxton)ENSG00000129292 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129292 [Gene_View]  chr8:132775358-132848807 [Contig_View]  PHF20L1 [Vega]
ICGC DataPortalENSG00000129292
TCGA cBioPortalPHF20L1
AceView (NCBI)PHF20L1
Genatlas (Paris)PHF20L1
WikiGenes51105
SOURCE (Princeton)PHF20L1
Genetics Home Reference (NIH)PHF20L1
Genomic and cartography
GoldenPath hg38 (UCSC)PHF20L1  -     chr8:132775358-132848807 +  8q24.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF20L1  -     8q24.22   [Description]    (hg19-Feb_2009)
EnsemblPHF20L1 - 8q24.22 [CytoView hg19]  PHF20L1 - 8q24.22 [CytoView hg38]
Mapping of homologs : NCBIPHF20L1 [Mapview hg19]  PHF20L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB101203 AF151830 AI913146 AK022280 AK023711
RefSeq transcript (Entrez)NM_001277196 NM_016018 NM_024878 NM_032205 NM_198513
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHF20L1
Cluster EST : UnigeneHs.304362 [ NCBI ]
CGAP (NCI)Hs.304362
Alternative Splicing GalleryENSG00000129292
Gene ExpressionPHF20L1 [ NCBI-GEO ]   PHF20L1 [ EBI - ARRAY_EXPRESS ]   PHF20L1 [ SEEK ]   PHF20L1 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF20L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51105
GTEX Portal (Tissue expression)PHF20L1
Human Protein AtlasENSG00000129292-PHF20L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MW92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MW92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MW92
Splice isoforms : SwissVarA8MW92
PhosPhoSitePlusA8MW92
Domaine pattern : Prosite (Expaxy)ZF_PHD_1 (PS01359)   
Domains : Interpro (EBI)Agenet_dom_plant    DUF3776    Mbt    Tudor    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)DUF3776 (PF12618)    MBT (PF02820)   
Domain families : Pfam (NCBI)pfam12618    pfam02820   
Domain families : Smart (EMBL)Agenet (SM00743)  TUDOR (SM00333)  
Conserved Domain (NCBI)PHF20L1
DMDM Disease mutations51105
Blocks (Seattle)PHF20L1
PDB (SRS)2EQM    2EQU    2JTF   
PDB (PDBSum)2EQM    2EQU    2JTF   
PDB (IMB)2EQM    2EQU    2JTF   
PDB (RSDB)2EQM    2EQU    2JTF   
Structural Biology KnowledgeBase2EQM    2EQU    2JTF   
SCOP (Structural Classification of Proteins)2EQM    2EQU    2JTF   
CATH (Classification of proteins structures)2EQM    2EQU    2JTF   
SuperfamilyA8MW92
Human Protein Atlas [tissue]ENSG00000129292-PHF20L1 [tissue]
Peptide AtlasA8MW92
HPRD15125
IPIIPI00853077   IPI00384210   IPI00784421   IPI00984982   IPI00853304   IPI00852972   IPI00938338   IPI00853580   IPI00853248   IPI01014433   IPI01014837   IPI00983807   IPI00982256   
Protein Interaction databases
DIP (DOE-UCLA)A8MW92
IntAct (EBI)A8MW92
FunCoupENSG00000129292
BioGRIDPHF20L1
STRING (EMBL)PHF20L1
ZODIACPHF20L1
Ontologies - Pathways
QuickGOA8MW92
Ontology : AmiGOprotein binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIprotein binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkPHF20L1
Atlas of Cancer Signalling NetworkPHF20L1
Wikipedia pathwaysPHF20L1
Orthology - Evolution
OrthoDB51105
GeneTree (enSembl)ENSG00000129292
Phylogenetic Trees/Animal Genes : TreeFamPHF20L1
HOVERGENA8MW92
HOGENOMA8MW92
Homologs : HomoloGenePHF20L1
Homology/Alignments : Family Browser (UCSC)PHF20L1
Gene fusions - Rearrangements
Fusion : MitelmanPHF20L1/SAMD12 [8q24.22/8q24.12]  
Tumor Fusion PortalPHF20L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF20L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF20L1
dbVarPHF20L1
ClinVarPHF20L1
1000_GenomesPHF20L1 
Exome Variant ServerPHF20L1
ExAC (Exome Aggregation Consortium)ENSG00000129292
GNOMAD BrowserENSG00000129292
Genetic variants : HAPMAP51105
Genomic Variants (DGV)PHF20L1 [DGVbeta]
DECIPHERPHF20L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF20L1 
Mutations
ICGC Data PortalPHF20L1 
TCGA Data PortalPHF20L1 
Broad Tumor PortalPHF20L1
OASIS PortalPHF20L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF20L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHF20L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHF20L1
DgiDB (Drug Gene Interaction Database)PHF20L1
DoCM (Curated mutations)PHF20L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF20L1 (select a term)
intoGenPHF20L1
Cancer3DPHF20L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPHF20L1
MedgenPHF20L1
Genetic Testing Registry PHF20L1
NextProtA8MW92 [Medical]
TSGene51105
GENETestsPHF20L1
Target ValidationPHF20L1
Huge Navigator PHF20L1 [HugePedia]
snp3D : Map Gene to Disease51105
BioCentury BCIQPHF20L1
ClinGenPHF20L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51105
Chemical/Pharm GKB GenePA134874888
Clinical trialPHF20L1
Miscellaneous
canSAR (ICR)PHF20L1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF20L1
EVEXPHF20L1
GoPubMedPHF20L1
iHOPPHF20L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:28:36 CET 2017

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