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PHF20L1 (PHD finger protein 20 like 1)

Identity

Alias (NCBI)CGI-72
TDRD20B
URLC1
HGNC (Hugo) PHF20L1
HGNC Alias symbCGI-72
FLJ13649
MGC64923
FLJ21615
TDRD20B
HGNC Alias nametudor domain containing 20B
LocusID (NCBI) 51105
Atlas_Id 53032
Location 8q24.22  [Link to chromosome band 8q24]
Location_base_pair Starts at 132775358 and ends at 132813194 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PHF20L1 (8q24.22) / PGA3 (11q12.2)PHF20L1 (8q24.22) / RAD51AP1 (12p13.32)PHF20L1 (8q24.22) / SAMD12 (8q24.12)
SAMD12 (8q24.12) / PHF20L1 (8q24.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PHF20L1   24280
Cards
Entrez_Gene (NCBI)PHF20L1    PHD finger protein 20 like 1
AliasesCGI-72; TDRD20B; URLC1
GeneCards (Weizmann)PHF20L1
Ensembl hg19 (Hinxton)ENSG00000129292 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129292 [Gene_View]  ENSG00000129292 [Sequence]  chr8:132775358-132813194 [Contig_View]  PHF20L1 [Vega]
ICGC DataPortalENSG00000129292
TCGA cBioPortalPHF20L1
AceView (NCBI)PHF20L1
Genatlas (Paris)PHF20L1
SOURCE (Princeton)PHF20L1
Genetics Home Reference (NIH)PHF20L1
Genomic and cartography
GoldenPath hg38 (UCSC)PHF20L1  -     chr8:132775358-132813194 +  8q24.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF20L1  -     8q24.22   [Description]    (hg19-Feb_2009)
GoldenPathPHF20L1 - 8q24.22 [CytoView hg19]  PHF20L1 - 8q24.22 [CytoView hg38]
ImmunoBaseENSG00000129292
Genome Data Viewer NCBIPHF20L1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB101203 AF151830 AI913146 AK022280 AK023711
RefSeq transcript (Entrez)NM_001277196 NM_001362971 NM_016018 NM_024878 NM_032205 NM_198513
Consensus coding sequences : CCDS (NCBI)PHF20L1
Gene ExpressionPHF20L1 [ NCBI-GEO ]   PHF20L1 [ EBI - ARRAY_EXPRESS ]   PHF20L1 [ SEEK ]   PHF20L1 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF20L1 [ Firebrowse - Broad ]
GenevisibleExpression of PHF20L1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51105
GTEX Portal (Tissue expression)PHF20L1
Human Protein AtlasENSG00000129292-PHF20L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MW92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MW92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MW92
PhosPhoSitePlusA8MW92
Domaine pattern : Prosite (Expaxy)ZF_PHD_1 (PS01359)   
Domains : Interpro (EBI)Agenet_dom_plant    DUF3776    KDM4_Tudor_2    Mbt    PHF20-like    Tudor    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)DUF3776 (PF12618)    MBT (PF02820)    Tudor_2 (PF18104)   
Domain families : Pfam (NCBI)pfam12618    pfam02820    pfam18104   
Domain families : Smart (EMBL)Agenet (SM00743)  TUDOR (SM00333)  
Conserved Domain (NCBI)PHF20L1
PDB (RSDB)2EQM    2EQU    2JTF    6L0X    6L10    6L1C    6L1F    6L1I    6L1P   
PDB Europe2EQM    2EQU    2JTF    6L0X    6L10    6L1C    6L1F    6L1I    6L1P   
PDB (PDBSum)2EQM    2EQU    2JTF    6L0X    6L10    6L1C    6L1F    6L1I    6L1P   
PDB (IMB)2EQM    2EQU    2JTF    6L0X    6L10    6L1C    6L1F    6L1I    6L1P   
Structural Biology KnowledgeBase2EQM    2EQU    2JTF    6L0X    6L10    6L1C    6L1F    6L1I    6L1P   
SCOP (Structural Classification of Proteins)2EQM    2EQU    2JTF    6L0X    6L10    6L1C    6L1F    6L1I    6L1P   
CATH (Classification of proteins structures)2EQM    2EQU    2JTF    6L0X    6L10    6L1C    6L1F    6L1I    6L1P   
SuperfamilyA8MW92
AlphaFold pdb e-kbA8MW92   
Human Protein Atlas [tissue]ENSG00000129292-PHF20L1 [tissue]
HPRD15125
Protein Interaction databases
DIP (DOE-UCLA)A8MW92
IntAct (EBI)A8MW92
BioGRIDPHF20L1
STRING (EMBL)PHF20L1
ZODIACPHF20L1
Ontologies - Pathways
QuickGOA8MW92
Ontology : AmiGOprotein binding  regulation of transcription by RNA polymerase II  histone acetylation  NSL complex  metal ion binding  
Ontology : EGO-EBIprotein binding  regulation of transcription by RNA polymerase II  histone acetylation  NSL complex  metal ion binding  
NDEx NetworkPHF20L1
Atlas of Cancer Signalling NetworkPHF20L1
Wikipedia pathwaysPHF20L1
Orthology - Evolution
OrthoDB51105
GeneTree (enSembl)ENSG00000129292
Phylogenetic Trees/Animal Genes : TreeFamPHF20L1
Homologs : HomoloGenePHF20L1
Homology/Alignments : Family Browser (UCSC)PHF20L1
Gene fusions - Rearrangements
Fusion : MitelmanPHF20L1/SAMD12 [8q24.22/8q24.12]  
Fusion : QuiverPHF20L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF20L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF20L1
dbVarPHF20L1
ClinVarPHF20L1
MonarchPHF20L1
1000_GenomesPHF20L1 
Exome Variant ServerPHF20L1
GNOMAD BrowserENSG00000129292
Varsome BrowserPHF20L1
ACMGPHF20L1 variants
VarityA8MW92
Genomic Variants (DGV)PHF20L1 [DGVbeta]
DECIPHERPHF20L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF20L1 
Mutations
ICGC Data PortalPHF20L1 
TCGA Data PortalPHF20L1 
Broad Tumor PortalPHF20L1
OASIS PortalPHF20L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF20L1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPHF20L1
Mutations and Diseases : HGMDPHF20L1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPHF20L1
DgiDB (Drug Gene Interaction Database)PHF20L1
DoCM (Curated mutations)PHF20L1
CIViC (Clinical Interpretations of Variants in Cancer)PHF20L1
Cancer3DPHF20L1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPHF20L1
MedgenPHF20L1
Genetic Testing Registry PHF20L1
NextProtA8MW92 [Medical]
GENETestsPHF20L1
Target ValidationPHF20L1
Huge Navigator PHF20L1 [HugePedia]
ClinGenPHF20L1
Clinical trials, drugs, therapy
MyCancerGenomePHF20L1
Protein Interactions : CTDPHF20L1
Pharm GKB GenePA134874888
PharosA8MW92
Clinical trialPHF20L1
Miscellaneous
canSAR (ICR)PHF20L1
HarmonizomePHF20L1
DataMed IndexPHF20L1
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPHF20L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:25:08 CEST 2021

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