Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PHF21B (PHD finger protein 21B)

Identity

Alias_namesPHF4
PHD finger protein 4
Alias_symbol (synonym)BHC80L
FLJ34161
Other alias
HGNC (Hugo) PHF21B
LocusID (NCBI) 112885
Atlas_Id 55425
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 44881163 and ends at 45009928 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PHF21B (22q13.31) / NCOR1 (17p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHF21B   25161
Cards
Entrez_Gene (NCBI)PHF21B  112885  PHD finger protein 21B
AliasesBHC80L; PHF4
GeneCards (Weizmann)PHF21B
Ensembl hg19 (Hinxton)ENSG00000056487 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000056487 [Gene_View]  chr22:44881163-45009928 [Contig_View]  PHF21B [Vega]
ICGC DataPortalENSG00000056487
TCGA cBioPortalPHF21B
AceView (NCBI)PHF21B
Genatlas (Paris)PHF21B
WikiGenes112885
SOURCE (Princeton)PHF21B
Genetics Home Reference (NIH)PHF21B
Genomic and cartography
GoldenPath hg38 (UCSC)PHF21B  -     chr22:44881163-45009928 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF21B  -     22q13.31   [Description]    (hg19-Feb_2009)
EnsemblPHF21B - 22q13.31 [CytoView hg19]  PHF21B - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBIPHF21B [Mapview hg19]  PHF21B [Mapview hg38]
OMIM616727   
Gene and transcription
Genbank (Entrez)AK091480 AK092243 AK095777 AK297317 AK299836
RefSeq transcript (Entrez)NM_001135862 NM_001242450 NM_001284296 NM_138415
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHF21B
Cluster EST : UnigeneHs.254097 [ NCBI ]
CGAP (NCI)Hs.254097
Alternative Splicing GalleryENSG00000056487
Gene ExpressionPHF21B [ NCBI-GEO ]   PHF21B [ EBI - ARRAY_EXPRESS ]   PHF21B [ SEEK ]   PHF21B [ MEM ]
Gene Expression Viewer (FireBrowse)PHF21B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112885
GTEX Portal (Tissue expression)PHF21B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EK2
Splice isoforms : SwissVarQ96EK2
PhosPhoSitePlusQ96EK2
Domaine pattern : Prosite (Expaxy)ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PHD (PF00628)   
Domain families : Pfam (NCBI)pfam00628   
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)PHF21B
DMDM Disease mutations112885
Blocks (Seattle)PHF21B
SuperfamilyQ96EK2
Human Protein AtlasENSG00000056487
Peptide AtlasQ96EK2
HPRD13997
IPIIPI00738578   IPI00739761   IPI01009331   IPI00061521   IPI00893566   
Protein Interaction databases
DIP (DOE-UCLA)Q96EK2
IntAct (EBI)Q96EK2
FunCoupENSG00000056487
BioGRIDPHF21B
STRING (EMBL)PHF21B
ZODIACPHF21B
Ontologies - Pathways
QuickGOQ96EK2
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  chromatin binding  transcription cofactor activity  nucleus  regulation of transcription, DNA-templated  zinc ion binding  histone binding  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  chromatin binding  transcription cofactor activity  nucleus  regulation of transcription, DNA-templated  zinc ion binding  histone binding  
NDEx NetworkPHF21B
Atlas of Cancer Signalling NetworkPHF21B
Wikipedia pathwaysPHF21B
Orthology - Evolution
OrthoDB112885
GeneTree (enSembl)ENSG00000056487
Phylogenetic Trees/Animal Genes : TreeFamPHF21B
HOVERGENQ96EK2
HOGENOMQ96EK2
Homologs : HomoloGenePHF21B
Homology/Alignments : Family Browser (UCSC)PHF21B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF21B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF21B
dbVarPHF21B
ClinVarPHF21B
1000_GenomesPHF21B 
Exome Variant ServerPHF21B
ExAC (Exome Aggregation Consortium)PHF21B (select the gene name)
Genetic variants : HAPMAP112885
Genomic Variants (DGV)PHF21B [DGVbeta]
DECIPHERPHF21B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF21B 
Mutations
ICGC Data PortalPHF21B 
TCGA Data PortalPHF21B 
Broad Tumor PortalPHF21B
OASIS PortalPHF21B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF21B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHF21B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHF21B
DgiDB (Drug Gene Interaction Database)PHF21B
DoCM (Curated mutations)PHF21B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF21B (select a term)
intoGenPHF21B
Cancer3DPHF21B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616727   
Orphanet
MedgenPHF21B
Genetic Testing Registry PHF21B
NextProtQ96EK2 [Medical]
TSGene112885
GENETestsPHF21B
Huge Navigator PHF21B [HugePedia]
snp3D : Map Gene to Disease112885
BioCentury BCIQPHF21B
ClinGenPHF21B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112885
Chemical/Pharm GKB GenePA134872136
Clinical trialPHF21B
Miscellaneous
canSAR (ICR)PHF21B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF21B
EVEXPHF21B
GoPubMedPHF21B
iHOPPHF21B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:31:02 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.