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PHF23 (PHD finger protein 23)

Identity

Alias_symbol (synonym)MGC2941
FLJ16355
Other aliashJUNE-1b
HGNC (Hugo) PHF23
LocusID (NCBI) 79142
Atlas_Id 54534
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7235028 and ends at 7239506 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GABARAP (17p13.1) / PHF23 (17p13.1)NUP98 (11p15.4) / PHF23 (17p13.1)PHF23 (17p13.1) / RRM1 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;17)(p15;p13) NUP98/PHF23


External links

Nomenclature
HGNC (Hugo)PHF23   28428
Cards
Entrez_Gene (NCBI)PHF23  79142  PHD finger protein 23
AliaseshJUNE-1b
GeneCards (Weizmann)PHF23
Ensembl hg19 (Hinxton)ENSG00000040633 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000040633 [Gene_View]  chr17:7235028-7239506 [Contig_View]  PHF23 [Vega]
ICGC DataPortalENSG00000040633
TCGA cBioPortalPHF23
AceView (NCBI)PHF23
Genatlas (Paris)PHF23
WikiGenes79142
SOURCE (Princeton)PHF23
Genetics Home Reference (NIH)PHF23
Genomic and cartography
GoldenPath hg38 (UCSC)PHF23  -     chr17:7235028-7239506 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF23  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblPHF23 - 17p13.1 [CytoView hg19]  PHF23 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIPHF23 [Mapview hg19]  PHF23 [Mapview hg38]
OMIM612910   
Gene and transcription
Genbank (Entrez)AI129084 AK026537 AK074766 AK122791 AK122901
RefSeq transcript (Entrez)NM_001284517 NM_001284518 NM_024297
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHF23
Cluster EST : UnigeneHs.644724 [ NCBI ]
CGAP (NCI)Hs.644724
Alternative Splicing GalleryENSG00000040633
Gene ExpressionPHF23 [ NCBI-GEO ]   PHF23 [ EBI - ARRAY_EXPRESS ]   PHF23 [ SEEK ]   PHF23 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79142
GTEX Portal (Tissue expression)PHF23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUL5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUL5
Splice isoforms : SwissVarQ9BUL5
PhosPhoSitePlusQ9BUL5
Domains : Interpro (EBI)Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PHD (PF00628)   
Domain families : Pfam (NCBI)pfam00628   
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)PHF23
DMDM Disease mutations79142
Blocks (Seattle)PHF23
SuperfamilyQ9BUL5
Human Protein AtlasENSG00000040633
Peptide AtlasQ9BUL5
IPIIPI00063434   IPI00884059   IPI01014368   IPI00909300   IPI00184720   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUL5
IntAct (EBI)Q9BUL5
FunCoupENSG00000040633
BioGRIDPHF23
STRING (EMBL)PHF23
ZODIACPHF23
Ontologies - Pathways
QuickGOQ9BUL5
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  autophagy  zinc ion binding  positive regulation of protein ubiquitination  negative regulation of autophagosome maturation  negative regulation of autophagosome assembly  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  autophagy  zinc ion binding  positive regulation of protein ubiquitination  negative regulation of autophagosome maturation  negative regulation of autophagosome assembly  
NDEx NetworkPHF23
Atlas of Cancer Signalling NetworkPHF23
Wikipedia pathwaysPHF23
Orthology - Evolution
OrthoDB79142
GeneTree (enSembl)ENSG00000040633
Phylogenetic Trees/Animal Genes : TreeFamPHF23
HOVERGENQ9BUL5
HOGENOMQ9BUL5
Homologs : HomoloGenePHF23
Homology/Alignments : Family Browser (UCSC)PHF23
Gene fusions - Rearrangements
Fusion : MitelmanNUP98/PHF23 [11p15.4/17p13.1]  [t(11;17)(p15;p13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF23
dbVarPHF23
ClinVarPHF23
1000_GenomesPHF23 
Exome Variant ServerPHF23
ExAC (Exome Aggregation Consortium)PHF23 (select the gene name)
Genetic variants : HAPMAP79142
Genomic Variants (DGV)PHF23 [DGVbeta]
DECIPHERPHF23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF23 
Mutations
ICGC Data PortalPHF23 
TCGA Data PortalPHF23 
Broad Tumor PortalPHF23
OASIS PortalPHF23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHF23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHF23
DgiDB (Drug Gene Interaction Database)PHF23
DoCM (Curated mutations)PHF23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF23 (select a term)
intoGenPHF23
Cancer3DPHF23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612910   
Orphanet
MedgenPHF23
Genetic Testing Registry PHF23
NextProtQ9BUL5 [Medical]
TSGene79142
GENETestsPHF23
Target ValidationPHF23
Huge Navigator PHF23 [HugePedia]
snp3D : Map Gene to Disease79142
BioCentury BCIQPHF23
ClinGenPHF23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79142
Chemical/Pharm GKB GenePA142671175
Clinical trialPHF23
Miscellaneous
canSAR (ICR)PHF23 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF23
EVEXPHF23
GoPubMedPHF23
iHOPPHF23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:03:13 CEST 2017

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