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PHF24 (PHD finger protein 24)

Identity

Alias_namesKIAA1045
KIAA1045
Other alias
HGNC (Hugo) PHF24
LocusID (NCBI) 23349
Atlas_Id 64870
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34957484 and ends at 34978194 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
B4GALT1 (9p21.1) / PHF24 (9p13.3)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PHF24   29180
Cards
Entrez_Gene (NCBI)PHF24  23349  PHD finger protein 24
AliasesKIAA1045
GeneCards (Weizmann)PHF24
Ensembl hg19 (Hinxton)ENSG00000122733 [Gene_View]  chr9:34957484-34978194 [Contig_View]  PHF24 [Vega]
Ensembl hg38 (Hinxton)ENSG00000122733 [Gene_View]  chr9:34957484-34978194 [Contig_View]  PHF24 [Vega]
ICGC DataPortalENSG00000122733
TCGA cBioPortalPHF24
AceView (NCBI)PHF24
Genatlas (Paris)PHF24
WikiGenes23349
SOURCE (Princeton)PHF24
Genetics Home Reference (NIH)PHF24
Genomic and cartography
GoldenPath hg19 (UCSC)PHF24  -     chr9:34957484-34978194 +  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PHF24  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblPHF24 - 9p13.3 [CytoView hg19]  PHF24 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIPHF24 [Mapview hg19]  PHF24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB028968 AK294342 AL137621 AY956806 AY956807
RefSeq transcript (Entrez)NM_001304333 NM_015297
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)PHF24
Cluster EST : UnigeneHs.7989 [ NCBI ]
CGAP (NCI)Hs.7989
Alternative Splicing GalleryENSG00000122733
Gene ExpressionPHF24 [ NCBI-GEO ]   PHF24 [ EBI - ARRAY_EXPRESS ]   PHF24 [ SEEK ]   PHF24 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23349
GTEX Portal (Tissue expression)PHF24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPV7
Splice isoforms : SwissVarQ9UPV7
PhosPhoSitePlusQ9UPV7
Domaine pattern : Prosite (Expaxy)ZF_PHD_1 (PS01359)   
Domains : Interpro (EBI)Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PHF24
DMDM Disease mutations23349
Blocks (Seattle)PHF24
PDB (SRS)1WIL   
PDB (PDBSum)1WIL   
PDB (IMB)1WIL   
PDB (RSDB)1WIL   
Structural Biology KnowledgeBase1WIL   
SCOP (Structural Classification of Proteins)1WIL   
CATH (Classification of proteins structures)1WIL   
SuperfamilyQ9UPV7
Human Protein AtlasENSG00000122733
Peptide AtlasQ9UPV7
IPIIPI00852954   IPI00977552   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPV7
IntAct (EBI)Q9UPV7
FunCoupENSG00000122733
BioGRIDPHF24
STRING (EMBL)PHF24
ZODIACPHF24
Ontologies - Pathways
QuickGOQ9UPV7
Ontology : AmiGOmetal ion binding  
Ontology : EGO-EBImetal ion binding  
NDEx NetworkPHF24
Atlas of Cancer Signalling NetworkPHF24
Wikipedia pathwaysPHF24
Orthology - Evolution
OrthoDB23349
GeneTree (enSembl)ENSG00000122733
Phylogenetic Trees/Animal Genes : TreeFamPHF24
HOVERGENQ9UPV7
HOGENOMQ9UPV7
Homologs : HomoloGenePHF24
Homology/Alignments : Family Browser (UCSC)PHF24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF24
dbVarPHF24
ClinVarPHF24
1000_GenomesPHF24 
Exome Variant ServerPHF24
ExAC (Exome Aggregation Consortium)PHF24 (select the gene name)
Genetic variants : HAPMAP23349
Genomic Variants (DGV)PHF24 [DGVbeta]
DECIPHER (Syndromes)9:34957484-34978194  ENSG00000122733
CONAN: Copy Number AnalysisPHF24 
Mutations
ICGC Data PortalPHF24 
TCGA Data PortalPHF24 
Broad Tumor PortalPHF24
OASIS PortalPHF24 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPHF24
BioMutasearch PHF24
DgiDB (Drug Gene Interaction Database)PHF24
DoCM (Curated mutations)PHF24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF24 (select a term)
intoGenPHF24
Cancer3DPHF24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPHF24
Genetic Testing Registry PHF24
NextProtQ9UPV7 [Medical]
TSGene23349
GENETestsPHF24
Huge Navigator PHF24 [HugePedia]
snp3D : Map Gene to Disease23349
BioCentury BCIQPHF24
ClinGenPHF24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23349
Chemical/Pharm GKB GenePA134993280
Clinical trialPHF24
Miscellaneous
canSAR (ICR)PHF24 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF24
EVEXPHF24
GoPubMedPHF24
iHOPPHF24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:32 CET 2017

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